PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G061600.2 | ||||||||
Common Name | B456_006G061600, LOC105798681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 405aa MW: 45472.3 Da PI: 4.7534 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.1 | 4.1e-09 | 6 | 49 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ Ht+v Gorai.006G061600.2 6 ARACDGCLRKRARWYCSADDAFLCQGCDTSVHSAnqlasrHTRV 49 578*****************************668899999987 PP | |||||||
2 | CCT | 68.5 | 1.8e-23 | 348 | 391 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk+a Gorai.006G061600.2 348 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRIKGRFVKRA 391 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.6E-11 | 4 | 51 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.509 | 4 | 51 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-7 | 6 | 49 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.17E-9 | 7 | 51 | No hit | No description |
Pfam | PF06203 | 6.4E-18 | 348 | 390 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.152 | 348 | 390 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MGGKTARACD GCLRKRARWY CSADDAFLCQ GCDTSVHSAN QLASRHTRVR LETASSRFNA 60 SVINNSATDQ DAPPAWHQGF TRKARTPRQN RSILGQQKSE GKVWDLNPLV PEVGCEDGSA 120 DETEDQLLCR VPVFDPFSAE LRDMVNENGN LVVDGFEDEG TCQLDDGLHG FLPSDLDLAQ 180 FAADVESLLG DGLDENNTCN HTKGTELMDC KQEDESNAFQ ERKIKDEEEE EEGIITACCF 240 DSDFDVTRSS LNWSFDYESP TIGDQEEEEK VVPVAETMDG ENKAEKKRNM LLRLDYESVI 300 TAWATQGSPW TSGTRPEFNP DDFMGSNPKE GIGGICSQGK RNITDGEREA RVSRYREKRR 360 TRLFSKKIRY QVRKLNAEKR PRIKGRFVKR ASFVGGDCFS YYIK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 358 | 374 | RRTRLFSKKIRYQVRKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX583452 | 3e-62 | JX583452.1 Gossypium hirsutum clone NBRI_GE16495 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012484296.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
Swissprot | Q8RWD0 | 3e-91 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A0D2NMI0 | 0.0 | A0A0D2NMI0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G061600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-93 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G061600.2 |
Entrez Gene | 105798681 |
Publications ? help Back to Top | |||
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