PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G060300.1
Common NameB456_006G060300, LOC105798672
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 282aa    MW: 31930.8 Da    PI: 6.6534
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G060300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-182370148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd ll ++v+++G g+W++ a+  g++Rt+k+c++rw++yl
  Gorai.006G060300.1 23 KGPWTLEEDSLLTRYVARHGEGHWNLLAKLAGLRRTGKSCRLRWLNYL 70
                        79********************************************97 PP
2Myb_DNA-binding48.71.7e-1576119146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Gorai.006G060300.1  76 RGNLTPEEQFLILELHCKWGNR-WSKIAQELP-GRTDNEIKNYWRT 119
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9271874IPR017930Myb domain
SuperFamilySSF466898.44E-3121117IPR009057Homeodomain-like
SMARTSM007172.9E-152272IPR001005SANT/Myb domain
PfamPF002491.1E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-232477IPR009057Homeodomain-like
CDDcd001672.81E-112570No hitNo description
PROSITE patternPS0017503847IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
SMARTSM007173.9E-1375123IPR001005SANT/Myb domain
PROSITE profilePS5129418.99875125IPR017930Myb domain
PfamPF002492.7E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2378124IPR009057Homeodomain-like
CDDcd001672.12E-1080119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSSFTKASSS TSCSEEDTEQ LRKGPWTLEE DSLLTRYVAR HGEGHWNLLA KLAGLRRTGK  60
SCRLRWLNYL KPDVKRGNLT PEEQFLILEL HCKWGNRWSK IAQELPGRTD NEIKNYWRTR  120
VQKQARHLKI DANSAAFRNV IRCFWMPRLL QMMKGSSTLP QQVAGLGQQN SDSEQCASSC  180
VSSSESMNNN MSKISEFAEY QTSSFGITDN NEYNTVAKDC YYVDNSSCYG METINLPSTS  240
AVGDFMTADC HMVDNNWVND GFADGIWSMG ELWELPLKGN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26211255108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484284.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A0D2SSQ00.0A0A0D2SSQ0_GOSRA; Uncharacterized protein
STRINGGorai.006G060300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.15e-75myb domain protein 116
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]