PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G050200.1
Common NameB456_006G050200, LOC105798559
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 576aa    MW: 62354.4 Da    PI: 5.8625
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G050200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.21.5e-1102105752374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++++e+A a+s+g++   +++Larl +la+ +g++ qRl+ +++ AL++rl++    + ++ p++e     s+e++aa++l++++sP++k
  Gorai.006G050200.1 210 KQTIMEVASAISEGKTDVLNEILARLAQLANAKGNSEQRLTECMLLALKSRLNS----VESSPPVTELF---SKEHAAATQLLYDLSPCFK 293
                         5789*************************************************9....55444555554...99***************** PP

                GRAS  93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         +++++aNqaIl+a+  +   +++H+iDfdi+qG+Q+ +Ll+aL++R +g p +++iT +++  +g  e+l+++g++L+ +Ae+lgv+++f+
  Gorai.006G050200.1 294 LGFMAANQAILDATLDQpscNKLHVIDFDIGQGGQYTTLLHALSERGRGNPaMIKITCIAD--NGGDERLKTVGSKLSLVAERLGVRLKFT 382
                         *************998878899************************9555549********..77************************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         v+ + +l+dl+ e+L ++ +E laVn++++l+r++desvs+e++rde+L+ vk+l P vv++veqe+++n+++F+ r+ ea+ yy alf+s
  Gorai.006G050200.1 383 VVPSLKLSDLSRESLGCELDEPLAVNFAFKLYRMPDESVSVENPRDELLRRVKRLAPCVVTLVEQEINTNTAPFASRVGEAVGYYGALFES 473
                         *8888************************************************************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         +e++++re++er+kvE+  l r+i n vaceg++r+er+e ++kWr+r+++aGF+  plse++a+++++ l+  ++ g++v+ee+g + +g
  Gorai.006G050200.1 474 IESTFGRENSERVKVEEG-LLRKIANSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSESVAESIRARLNC-GNPGFTVKEENGGISFG 562
                         ******************.889*************************************************75.55*************** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++r+L+++SaWr
  Gorai.006G050200.1 563 WMGRTLTVASAWR 575
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.686183556IPR005202Transcription factor GRAS
PfamPF035145.1E-108210575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MTSGFSGGGT EFYGRIAGGS VSNSGSMSNN QPTAPYGTHG IFMDPTSQIV NRAAPSFVGK  60
RTRADFNNHG LNNLYPRPRY GVPVLQQLRP QQLPLGISSG ATIQDVNPGF SSAQYLNLVQ  120
ARVVQAQDPE KKMMNQLQEL EKQLLDDDNE EEGDAVSVIT NSNSEWSETI QTLISSSSPN  180
KPIATSPTSS TTSSSSSTSS VASPVSLCSK QTIMEVASAI SEGKTDVLNE ILARLAQLAN  240
AKGNSEQRLT ECMLLALKSR LNSVESSPPV TELFSKEHAA ATQLLYDLSP CFKLGFMAAN  300
QAILDATLDQ PSCNKLHVID FDIGQGGQYT TLLHALSERG RGNPAMIKIT CIADNGGDER  360
LKTVGSKLSL VAERLGVRLK FTVVPSLKLS DLSRESLGCE LDEPLAVNFA FKLYRMPDES  420
VSVENPRDEL LRRVKRLAPC VVTLVEQEIN TNTAPFASRV GEAVGYYGAL FESIESTFGR  480
ENSERVKVEE GLLRKIANSV ACEGRDRVER CEVFGKWRAR MSMAGFELKP LSESVAESIR  540
ARLNCGNPGF TVKEENGGIS FGWMGRTLTV ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4323257526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5907633e-32JX590763.1 Gossypium hirsutum clone NBRI_GE25751 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484125.10.0PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR71e-174SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D2SSA80.0A0A0D2SSA8_GOSRA; Uncharacterized protein
STRINGGorai.006G050200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-165SCARECROW-like 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]