PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G047300.2

Common Name

B456_006G047300, LOC105798514

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 745aa MW: 82168.6 Da PI: 6.4152

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G047300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k ++++++q++eLe++F+++++p++++r+eL+++l L+ +q+k+WFqNrR+++k Gorai.006G047300.2 56 KFHRHNPHQIHELESFFKECPHPDEKQRRELSRRLALESKQIKFWFQNRRTQMK 109 556899*********************************************999 PP
2	START	165.7	3.3e-52	259	478	2	203
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 +a++a++el+k+a+ + p+W k e +n +e+ ++f++ + +++ea r++++v+ lv +l+d + +W e+++ +a Gorai.006G047300.2 259 VALAAMDELIKMAQMGNPLWIKGFgdgmETLNLEEYKRTFSSFIGmkpsgFTTEATRETAMVPLRGLALVDTLMDAN-RWAEMFPcmisRA 348 7899*****************9999999999999999977555999*************************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 t++v+ssg +alqlm ae+q+lsplvp R f+R+++q+++ +w+ivdvS++ + + +v +++lpSg++i++++n +sk Gorai.006G047300.2 349 VTIDVLSSGkgvtrdNALQLMEAEFQVLSPLVPiRQIQFIRFCKQHSDSVWAIVDVSINLSNAAN-ALMFVNCRRLPSGCVIQDMDNKYSK 438 ***********************************************************99.9******************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 vtwveh +++++++h llr+l++sg +ga++w atl+rq Gorai.006G047300.2 439 VTWVEHSEYDESTVHHLLRPLLSSGFGFGAQRWIATLRRQ 478 ***********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-20	41	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.63E-19	43	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	51	111	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	52	115	IPR001356	Homeobox domain
CDD	cd00086	7.08E-18	54	111	No hit	No description
Pfam	PF00046	8.9E-17	56	109	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.134	249	484	IPR002913	START domain
SuperFamily	SSF55961	3.71E-31	250	480	No hit	No description
CDD	cd08875	5.84E-110	253	478	No hit	No description
SMART	SM00234	2.9E-32	258	481	IPR002913	START domain
Pfam	PF01852	3.0E-44	259	478	IPR002913	START domain
SuperFamily	SSF55961	4.67E-14	523	732	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MASHGELRLI GENYDPGFIG MMKEDDGYGS SDDFEGALGN DQDTADNGRP PKKKKKFHRH 60 NPHQIHELES FFKECPHPDE KQRRELSRRL ALESKQIKFW FQNRRTQMKT QLERHENVFL 120 KQENDKLRAE NDLLRQAIAS AICNNCGVPA VPDEISYEPS QLMIENSRLK DELNRARALT 180 NKFLGRHLSS SSANPSPSPS QGLNSNVEVV VRRTGFCGLN NGSTSLPMGF EFGHGATMPL 240 MNPSFAYEMP YDKSALVDVA LAAMDELIKM AQMGNPLWIK GFGDGMETLN LEEYKRTFSS 300 FIGMKPSGFT TEATRETAMV PLRGLALVDT LMDANRWAEM FPCMISRAVT IDVLSSGKGV 360 TRDNALQLME AEFQVLSPLV PIRQIQFIRF CKQHSDSVWA IVDVSINLSN AANALMFVNC 420 RRLPSGCVIQ DMDNKYSKVT WVEHSEYDES TVHHLLRPLL SSGFGFGAQR WIATLRRQYS 480 SLAQLMSPDI HGEDINTVGK KSMLKLAQRM AYNFSAGIGA SSVNKWDNLN VGNVGEDVRV 540 MTRKNVNDPG EPLGIVLSAA TSVWMPITQQ TLFGFLRNER MRNQWDILSS GRPMQAMFSV 600 AKGPGQGNCV SILRGAAVNG SDTNMLILQE TWSDACGALI VYAPVDASSI RVVMNGGDSS 660 HVALLPSGFA ILPGVQTDGP SMQPDIDENT SDGCILTVGF QILVNSVPTA KLTVESVETV 720 NHLLTCTVEK IKAALSVTQL GSVE*

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MASHGELRLI GENYDPGFIG MMKEDDGYGS SDDFEGALGN DQDTADNGRP PKKKKKFHRH  60
NPHQIHELES FFKECPHPDE KQRRELSRRL ALESKQIKFW FQNRRTQMKT QLERHENVFL  120
KQENDKLRAE NDLLRQAIAS AICNNCGVPA VPDEISYEPS QLMIENSRLK DELNRARALT  180
NKFLGRHLSS SSANPSPSPS QGLNSNVEVV VRRTGFCGLN NGSTSLPMGF EFGHGATMPL  240
MNPSFAYEMP YDKSALVDVA LAAMDELIKM AQMGNPLWIK GFGDGMETLN LEEYKRTFSS  300
FIGMKPSGFT TEATRETAMV PLRGLALVDT LMDANRWAEM FPCMISRAVT IDVLSSGKGV  360
TRDNALQLME AEFQVLSPLV PIRQIQFIRF CKQHSDSVWA IVDVSINLSN AANALMFVNC  420
RRLPSGCVIQ DMDNKYSKVT WVEHSEYDES TVHHLLRPLL SSGFGFGAQR WIATLRRQYS  480
SLAQLMSPDI HGEDINTVGK KSMLKLAQRM AYNFSAGIGA SSVNKWDNLN VGNVGEDVRV  540
MTRKNVNDPG EPLGIVLSAA TSVWMPITQQ TLFGFLRNER MRNQWDILSS GRPMQAMFSV  600
AKGPGQGNCV SILRGAAVNG SDTNMLILQE TWSDACGALI VYAPVDASSI RVVMNGGDSS  660
HVALLPSGFA ILPGVQTDGP SMQPDIDENT SDGCILTVGF QILVNSVPTA KLTVESVETV  720
NHLLTCTVEK IKAALSVTQL GSVE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY338495	0.0	AY338495.1 Gossypium hirsutum homeodomain protein BNLGHi6313 (bnlghi6313) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484066.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0D2RQG6	0.0	A0A0D2RQG6_GOSRA; Uncharacterized protein
STRING	Gorai.006G047300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G047300.2
Entrez Gene	105798514

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]