PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G047300.1

Common Name

B456_006G047300, LOC105798514

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 759aa MW: 83782.5 Da PI: 6.6554

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G047300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	70	123	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k ++++++q++eLe++F+++++p++++r+eL+++l L+ +q+k+WFqNrR+++k Gorai.006G047300.1 70 KFHRHNPHQIHELESFFKECPHPDEKQRRELSRRLALESKQIKFWFQNRRTQMK 123 556899*********************************************999 PP
2	START	165.6	3.4e-52	273	492	2	203
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 +a++a++el+k+a+ + p+W k e +n +e+ ++f++ + +++ea r++++v+ lv +l+d + +W e+++ +a Gorai.006G047300.1 273 VALAAMDELIKMAQMGNPLWIKGFgdgmETLNLEEYKRTFSSFIGmkpsgFTTEATRETAMVPLRGLALVDTLMDAN-RWAEMFPcmisRA 362 7899*****************9999999999999999977555999*************************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 t++v+ssg +alqlm ae+q+lsplvp R f+R+++q+++ +w+ivdvS++ + + +v +++lpSg++i++++n +sk Gorai.006G047300.1 363 VTIDVLSSGkgvtrdNALQLMEAEFQVLSPLVPiRQIQFIRFCKQHSDSVWAIVDVSINLSNAAN-ALMFVNCRRLPSGCVIQDMDNKYSK 452 ***********************************************************99.9******************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 vtwveh +++++++h llr+l++sg +ga++w atl+rq Gorai.006G047300.1 453 VTWVEHSEYDESTVHHLLRPLLSSGFGFGAQRWIATLRRQ 492 ***********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-20	55	125	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.72E-19	57	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	65	125	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	66	129	IPR001356	Homeobox domain
CDD	cd00086	8.23E-18	68	125	No hit	No description
Pfam	PF00046	9.1E-17	70	123	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.134	263	498	IPR002913	START domain
SuperFamily	SSF55961	3.85E-31	264	494	No hit	No description
CDD	cd08875	8.09E-110	267	492	No hit	No description
SMART	SM00234	2.9E-32	272	495	IPR002913	START domain
Pfam	PF01852	3.1E-44	273	492	IPR002913	START domain
SuperFamily	SSF55961	4.81E-14	537	746	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MGVDNRTAFL HSKRMASHGE LRLIGENYDP GFIGMMKEDD GYGSSDDFEG ALGNDQDTAD 60 NGRPPKKKKK FHRHNPHQIH ELESFFKECP HPDEKQRREL SRRLALESKQ IKFWFQNRRT 120 QMKTQLERHE NVFLKQENDK LRAENDLLRQ AIASAICNNC GVPAVPDEIS YEPSQLMIEN 180 SRLKDELNRA RALTNKFLGR HLSSSSANPS PSPSQGLNSN VEVVVRRTGF CGLNNGSTSL 240 PMGFEFGHGA TMPLMNPSFA YEMPYDKSAL VDVALAAMDE LIKMAQMGNP LWIKGFGDGM 300 ETLNLEEYKR TFSSFIGMKP SGFTTEATRE TAMVPLRGLA LVDTLMDANR WAEMFPCMIS 360 RAVTIDVLSS GKGVTRDNAL QLMEAEFQVL SPLVPIRQIQ FIRFCKQHSD SVWAIVDVSI 420 NLSNAANALM FVNCRRLPSG CVIQDMDNKY SKVTWVEHSE YDESTVHHLL RPLLSSGFGF 480 GAQRWIATLR RQYSSLAQLM SPDIHGEDIN TVGKKSMLKL AQRMAYNFSA GIGASSVNKW 540 DNLNVGNVGE DVRVMTRKNV NDPGEPLGIV LSAATSVWMP ITQQTLFGFL RNERMRNQWD 600 ILSSGRPMQA MFSVAKGPGQ GNCVSILRGA AVNGSDTNML ILQETWSDAC GALIVYAPVD 660 ASSIRVVMNG GDSSHVALLP SGFAILPGVQ TDGPSMQPDI DENTSDGCIL TVGFQILVNS 720 VPTAKLTVES VETVNHLLTC TVEKIKAALS VTQLGSVE*

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MGVDNRTAFL HSKRMASHGE LRLIGENYDP GFIGMMKEDD GYGSSDDFEG ALGNDQDTAD  60
NGRPPKKKKK FHRHNPHQIH ELESFFKECP HPDEKQRREL SRRLALESKQ IKFWFQNRRT  120
QMKTQLERHE NVFLKQENDK LRAENDLLRQ AIASAICNNC GVPAVPDEIS YEPSQLMIEN  180
SRLKDELNRA RALTNKFLGR HLSSSSANPS PSPSQGLNSN VEVVVRRTGF CGLNNGSTSL  240
PMGFEFGHGA TMPLMNPSFA YEMPYDKSAL VDVALAAMDE LIKMAQMGNP LWIKGFGDGM  300
ETLNLEEYKR TFSSFIGMKP SGFTTEATRE TAMVPLRGLA LVDTLMDANR WAEMFPCMIS  360
RAVTIDVLSS GKGVTRDNAL QLMEAEFQVL SPLVPIRQIQ FIRFCKQHSD SVWAIVDVSI  420
NLSNAANALM FVNCRRLPSG CVIQDMDNKY SKVTWVEHSE YDESTVHHLL RPLLSSGFGF  480
GAQRWIATLR RQYSSLAQLM SPDIHGEDIN TVGKKSMLKL AQRMAYNFSA GIGASSVNKW  540
DNLNVGNVGE DVRVMTRKNV NDPGEPLGIV LSAATSVWMP ITQQTLFGFL RNERMRNQWD  600
ILSSGRPMQA MFSVAKGPGQ GNCVSILRGA AVNGSDTNML ILQETWSDAC GALIVYAPVD  660
ASSIRVVMNG GDSSHVALLP SGFAILPGVQ TDGPSMQPDI DENTSDGCIL TVGFQILVNS  720
VPTAKLTVES VETVNHLLTC TVEKIKAALS VTQLGSVE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY338495	0.0	AY338495.1 Gossypium hirsutum homeodomain protein BNLGHi6313 (bnlghi6313) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484066.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0D2RQG6	0.0	A0A0D2RQG6_GOSRA; Uncharacterized protein
STRING	Gorai.006G047300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G047300.1
Entrez Gene	105798514

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]