PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G047000.2

Common Name

B456_006G047000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 846aa MW: 97490.3 Da PI: 6.4659

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G047000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.5	1.2e-24	75	161	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ GFsvrk+ ++sk +g++++r+f+Cskeg+r++++++ + +++r+etrtgC a++ ++++ +gk++++++e +HnH+ Gorai.006G047000.2 75 RFYNKYARLSGFSVRKDWVNRSKIHGQVVSRKFTCSKEGYRRTDQRD-VIVKKHRKETRTGCLAHMIITRKPNGKYRLSHFEANHNHD 161 5******************************************99.9999*********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-22	75	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-22	283	377	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.163	563	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-6	574	601	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.8E-4	576	599	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MNKDDDDLGG PHEEDLDNRA QTSDQLDLNV EQECRSPKVN HVDSTHSNLP SKVETDADGV 60 LRVGIEFESD EHAYRFYNKY ARLSGFSVRK DWVNRSKIHG QVVSRKFTCS KEGYRRTDQR 120 DVIVKKHRKE TRTGCLAHMI ITRKPNGKYR LSHFEANHNH DNINPYNGHA LQLQKDLCFV 180 HVPETEQPNN LETQNPAFDL TSKILVRESL ECLPMDYFNH LRSERVRDMK EGEAGCLLHY 240 FQRQHFENPS FFYAILLDIN DKVSNIFWAD DNMVVDYNYF GDVVLLDMRF RTNKDYKPFV 300 QFIGVNHHNQ ALIFSAALLY DDTVESLKWL FHTFLEAMSG KKPKVILTDQ DATVVEAVGS 360 ILPETGHHIC VYQMHQNTLK HLSHIVKDAD AFSNDFRSCI YDHNDEDDFI HAWEAMLDKY 420 NLKQNEWLRW MYREKEKWAV VYGKNRFFID MKCSHLGESL SNKLRSYLND GQDVLQFFKH 480 FERVMDEQRH KEIKATHKMS HCKPELMGNV ILLKHASEIY TPKAFEVFQH EYEECLNVVA 540 NQCSQNGYLS EYKVNTFGKS QEYIVTFDSS DDLVICSCMK FEYVGFLCSH ALRVLDHRNI 600 KVVPSRYILK RWTKDARIGC AQDDSDFIIQ ENPKLVAASR YRDMCRSILN LSARAAESYD 660 AFHFASGQLN ETIEGVEKIL AQKAEDAQVI ASSSSAATAP DSENVEIFLD GNAIDDQEKS 720 CRTQSKKENE ATEPHRHKQK SILQRGLKNR RIQNEGSNSP NTITCISSSS PTNVSPQASV 780 SAPVMQRLFN FEANQVVQCV DQQSTLGIEQ TPHAEVYQNP NFYTDQHGSP NQTQLLQDKP 840 LIHGT*

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MNKDDDDLGG PHEEDLDNRA QTSDQLDLNV EQECRSPKVN HVDSTHSNLP SKVETDADGV  60
LRVGIEFESD EHAYRFYNKY ARLSGFSVRK DWVNRSKIHG QVVSRKFTCS KEGYRRTDQR  120
DVIVKKHRKE TRTGCLAHMI ITRKPNGKYR LSHFEANHNH DNINPYNGHA LQLQKDLCFV  180
HVPETEQPNN LETQNPAFDL TSKILVRESL ECLPMDYFNH LRSERVRDMK EGEAGCLLHY  240
FQRQHFENPS FFYAILLDIN DKVSNIFWAD DNMVVDYNYF GDVVLLDMRF RTNKDYKPFV  300
QFIGVNHHNQ ALIFSAALLY DDTVESLKWL FHTFLEAMSG KKPKVILTDQ DATVVEAVGS  360
ILPETGHHIC VYQMHQNTLK HLSHIVKDAD AFSNDFRSCI YDHNDEDDFI HAWEAMLDKY  420
NLKQNEWLRW MYREKEKWAV VYGKNRFFID MKCSHLGESL SNKLRSYLND GQDVLQFFKH  480
FERVMDEQRH KEIKATHKMS HCKPELMGNV ILLKHASEIY TPKAFEVFQH EYEECLNVVA  540
NQCSQNGYLS EYKVNTFGKS QEYIVTFDSS DDLVICSCMK FEYVGFLCSH ALRVLDHRNI  600
KVVPSRYILK RWTKDARIGC AQDDSDFIIQ ENPKLVAASR YRDMCRSILN LSARAAESYD  660
AFHFASGQLN ETIEGVEKIL AQKAEDAQVI ASSSSAATAP DSENVEIFLD GNAIDDQEKS  720
CRTQSKKENE ATEPHRHKQK SILQRGLKNR RIQNEGSNSP NTITCISSSS PTNVSPQASV  780
SAPVMQRLFN FEANQVVQCV DQQSTLGIEQ TPHAEVYQNP NFYTDQHGSP NQTQLLQDKP  840
LIHGT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484064.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0D2RX89	0.0	A0A0D2RX89_GOSRA; Uncharacterized protein
STRING	Gorai.006G047000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.006G047000.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]