PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G046100.2
Common NameB456_006G046100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 322aa    MW: 35214.2 Da    PI: 5.5747
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G046100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08221626
                        -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                        C+++ + G C+yGd+C+F H+
  Gorai.006G046100.2  2 CNYWVQ-GNCSYGDKCRFLHS 21
                        ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.33E-6121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-7119IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.109.0E-4420313IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.00942766IPR001680WD40 repeat
SuperFamilySSF509781.01E-4329314IPR017986WD40-repeat-containing domain
PfamPF004000.00673066IPR001680WD40 repeat
PROSITE profilePS5029419.53834283IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.0153475IPR001680WD40 repeat
PRINTSPR003201.5E-55367IPR020472G-protein beta WD-40 repeat
PROSITE patternPS0067805367IPR019775WD40 repeat, conserved site
SMARTSM003203.9106143IPR001680WD40 repeat
SMARTSM003200.0068150187IPR001680WD40 repeat
PROSITE profilePS5008210.909157196IPR001680WD40 repeat
PRINTSPR003201.5E-5174188IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0015190227IPR001680WD40 repeat
PfamPF004000.0032192226IPR001680WD40 repeat
PRINTSPR003201.5E-5214228IPR020472G-protein beta WD-40 repeat
SMARTSM003208.6231274IPR001680WD40 repeat
SMARTSM00320120277313IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MCNYWVQGNC SYGDKCRFLH SWSLGECFTL LNHLDGHQKV VTGIALPAGM DKLYTGSKDE  60
TVRAWDTNTG QCMGVINLGG EVGCMISEGP WLFVGIPNVV KAWNTQTNQE LSLSGPVGQV  120
YTMVVGNDLL FAGTQDGTIL AWKFNAVTNN FEPAASLKGH TLAVVSLVVG ANRLYSGSMD  180
HSIKAWSLET LQCLQTLTEH TSVVMSLLCW EQFLLSCSLD QTIKVWVATE SGNLEVTYTH  240
KEEHGLLNLR GMPDSESKPV LMCSCNDNSV RLYDLPSFSE KGKIFAKQEI RAIEVGPGGL  300
FFTGDGTGFR VWKWAEAVPK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-21312778323Tako8
6g6n_A2e-21312778323Tako8
6g6n_B2e-21312778323Tako8
6g6n_C2e-21312778323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145872e-35JX614587.1 Gossypium hirsutum clone NBRI_GE58084 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484043.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0D2SS530.0A0A0D2SS53_GOSRA; Uncharacterized protein
STRINGGorai.006G046100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-161C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]