PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G046100.1
Common NameB456_006G046100, LOC105798493
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 432aa    MW: 47089.4 Da    PI: 7.9592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G046100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-09110131426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+++ + G C+yGd+C+F H+
  Gorai.006G046100.1 110 KVCNYWVQ-GNCSYGDKCRFLHS 131
                         68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.2772551IPR000571Zinc finger, CCCH-type
SMARTSM003560.942650IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7107131IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6108132IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7109131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-8110129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.5E-43130423IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0094137176IPR001680WD40 repeat
SuperFamilySSF509781.46E-43140424IPR017986WD40-repeat-containing domain
PfamPF004000.01140176IPR001680WD40 repeat
PROSITE profilePS5008213.015144185IPR001680WD40 repeat
PROSITE profilePS5029419.538144393IPR017986WD40-repeat-containing domain
PRINTSPR003203.2E-5163177IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
SMARTSM003203.9216253IPR001680WD40 repeat
SMARTSM003200.0068260297IPR001680WD40 repeat
PROSITE profilePS5008210.909267306IPR001680WD40 repeat
PRINTSPR003203.2E-5284298IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0015300337IPR001680WD40 repeat
PfamPF004000.0047302336IPR001680WD40 repeat
PRINTSPR003203.2E-5324338IPR020472G-protein beta WD-40 repeat
SMARTSM003208.6341384IPR001680WD40 repeat
SMARTSM00320120387423IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDLDGGNRRV FNRLGGSSAA SPDSSKNQKV CYHWRAGKCS RFPCPFLHRE LPHPSGPAAA  60
TSNGSGAPKR FADDSGFSGP ALRRGPNFNN NHNNSWGRMG ANKVVRKTEK VCNYWVQGNC  120
SYGDKCRFLH SWSLGECFTL LNHLDGHQKV VTGIALPAGM DKLYTGSKDE TVRAWDTNTG  180
QCMGVINLGG EVGCMISEGP WLFVGIPNVV KAWNTQTNQE LSLSGPVGQV YTMVVGNDLL  240
FAGTQDGTIL AWKFNAVTNN FEPAASLKGH TLAVVSLVVG ANRLYSGSMD HSIKAWSLET  300
LQCLQTLTEH TSVVMSLLCW EQFLLSCSLD QTIKVWVATE SGNLEVTYTH KEEHGLLNLR  360
GMPDSESKPV LMCSCNDNSV RLYDLPSFSE KGKIFAKQEI RAIEVGPGGL FFTGDGTGFR  420
VWKWAEAVPK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201413878323Tako8
6g6n_A1e-201413878323Tako8
6g6n_B1e-201413878323Tako8
6g6n_C1e-201413878323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484043.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0D2RQF80.0A0A0D2RQF8_GOSRA; Uncharacterized protein
STRINGGorai.006G046100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]