PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G037100.1

Common Name

B456_006G037100, LOC105798398

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 822aa MW: 94375.9 Da PI: 6.8764

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G037100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.5	4.4e-23	142	228	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA + GFs+rk+ +ks+ +g +++r+f+C+++g+r ++++ ++r++r+etrtgC a++++ + gk++vt++e++HnHe++ Gorai.006G037100.1 142 CYSRYAVMEGFSIRKDFVNKSRVTGAVVSRRFTCYRQGYRPSKHSM--NTRKPRKETRTGCLAHMTIAWQPYGKFRVTNFENKHNHEFV 228 7*************************************998877..9************************************86 PP
2	FAR1	89.6	4.3e-28	276	364	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g +++r+f+C +eg+r+++k++ + +r+r+etr+gC a+l++++++dg ++vt++e++HnHel+ Gorai.006G037100.1 276 EFYNSYAGKVGFSVRKDYVNRSKIHGAVVSRRFTCFREGFRQKDKRD-LNIKRPRKETRIGCLAQLVISRQSDGSYRVTNFEEKHNHELV 364 6*****************************************999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-21	142	228	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.3E-25	276	364	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-27	486	579	IPR018289	MULE transposase domain
Pfam	PF04434	1.5E-5	755	800	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.435	766	802	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-5	777	804	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MSMDRSGHGI LTHGKNSEFQ NELHESNRAD VDMGEECKSS ETSSPEKSRE ATESESDSWS 60 GSASLVEKSA VEINGDECQA PPEIPLVNKY EMNVDSEQES QSLNTVSVDE LGPGVPVKDG 120 KGLFMVPAVG MEFESEEHAY KCYSRYAVME GFSIRKDFVN KSRVTGAVVS RRFTCYRQGY 180 RPSKHSMNTR KPRKETRTGC LAHMTIAWQP YGKFRVTNFE NKHNHEFVNP STAHLLPSQK 240 RLAFAEAVEA DLASSSGVDG VPKLGMGFES EDHAYEFYNS YAGKVGFSVR KDYVNRSKIH 300 GAVVSRRFTC FREGFRQKDK RDLNIKRPRK ETRIGCLAQL VISRQSDGSY RVTNFEEKHN 360 HELVAACRIR MLRSQKQLVA AQTAEGNAIE GRKIQLKSAY EVSCNSIGDC VDHEYDPVDQ 420 RSKLISKCTR EMRDGEAEKI QQYFQSKKVK NPSFFYAIQL DADNQIANIF WTDAKMVMDY 480 SDFGDVLCFD TTYRISEDCR LFSPFVGVNH HKQMVIFGAA LLYDETVDSF KWLFQKFLEA 540 MSGKKPKTIL TDQDEIVSEA ISSILPDINQ RVCVWHVYQR ALKQLSHMFI GSPPFVNDLL 600 SCFFDHEEEE DFIASWNHMM DLHGLWDNEW LNKIFENREQ WAIAYKRHIF CADIKSVQLR 660 GSFILNLKKY LKSDSDVLSF LKQLGKMVND WHYKELEANY DMSQNMPKLM GDVILLKHAR 720 DAYTPRIFEL FQQEYETCLN IVVNQCIENG SLLEYKVSIY GQPREYTVSY NLSNNTVCCS 780 CMKFEFIGVL CSHALKVLDY SNIRLLPSQY ILKRWTREAR V*

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MSMDRSGHGI LTHGKNSEFQ NELHESNRAD VDMGEECKSS ETSSPEKSRE ATESESDSWS  60
GSASLVEKSA VEINGDECQA PPEIPLVNKY EMNVDSEQES QSLNTVSVDE LGPGVPVKDG  120
KGLFMVPAVG MEFESEEHAY KCYSRYAVME GFSIRKDFVN KSRVTGAVVS RRFTCYRQGY  180
RPSKHSMNTR KPRKETRTGC LAHMTIAWQP YGKFRVTNFE NKHNHEFVNP STAHLLPSQK  240
RLAFAEAVEA DLASSSGVDG VPKLGMGFES EDHAYEFYNS YAGKVGFSVR KDYVNRSKIH  300
GAVVSRRFTC FREGFRQKDK RDLNIKRPRK ETRIGCLAQL VISRQSDGSY RVTNFEEKHN  360
HELVAACRIR MLRSQKQLVA AQTAEGNAIE GRKIQLKSAY EVSCNSIGDC VDHEYDPVDQ  420
RSKLISKCTR EMRDGEAEKI QQYFQSKKVK NPSFFYAIQL DADNQIANIF WTDAKMVMDY  480
SDFGDVLCFD TTYRISEDCR LFSPFVGVNH HKQMVIFGAA LLYDETVDSF KWLFQKFLEA  540
MSGKKPKTIL TDQDEIVSEA ISSILPDINQ RVCVWHVYQR ALKQLSHMFI GSPPFVNDLL  600
SCFFDHEEEE DFIASWNHMM DLHGLWDNEW LNKIFENREQ WAIAYKRHIF CADIKSVQLR  660
GSFILNLKKY LKSDSDVLSF LKQLGKMVND WHYKELEANY DMSQNMPKLM GDVILLKHAR  720
DAYTPRIFEL FQQEYETCLN IVVNQCIENG SLLEYKVSIY GQPREYTVSY NLSNNTVCCS  780
CMKFEFIGVL CSHALKVLDY SNIRLLPSQY ILKRWTREAR V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483902.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A0D2RWN9	0.0	A0A0D2RWN9_GOSRA; Uncharacterized protein
STRING	Gorai.006G037100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-121	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.006G037100.1
Entrez Gene	105798398

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]