PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G036900.2

Common Name

B456_006G036900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 363aa MW: 40806.2 Da PI: 6.4358

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G036900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.7	1.2e-10	93	115	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C+f++++G Ck+G+ CkF+H+ Gorai.006G036900.2 93 ENCSFYLKSGNCKFGSCCKFNHP 115 89********************9 PP
2	zf-CCCH	26.4	1.2e-08	135	159	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+ +C+++++tG CkyG+ C++ H+ Gorai.006G036900.2 135 KQIECKYYRATGGCKYGNACRYRHS 159 7779******************997 PP
3	zf-CCCH	23	1.3e-07	198	220	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG C+++H++ Gorai.006G036900.2 198 ECKYYLSPGGCKYGKACRYSHSK 220 7********************95 PP
4	zf-CCCH	36.6	7.8e-12	248	270	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r+G C yG++C+F+H+ Gorai.006G036900.2 248 KECPYYMRNGSCAYGSSCRFNHP 270 68********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.544	89	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.067	89	116	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.5E-7	93	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.756	133	161	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-4	133	160	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	135	163	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-6	135	159	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-7	139	163	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.577	193	221	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0021	193	220	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	198	224	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.0E-6	198	220	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-5	199	221	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.802	244	272	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-5	246	271	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-6	247	272	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-9	248	270	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-5	250	269	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MGSYEEHSPV QREPPNETQP ESLSGFNSNT LLSNLYPGRE KQEEIIVRDL KSVTLEENDW 60 NGYGDNNNNS NENLQVEWQN GKNCQYPLRP YAENCSFYLK SGNCKFGSCC KFNHPVPRTI 120 KDKENHLGLA TDQKKQIECK YYRATGGCKY GNACRYRHSN EDYVLAPLEV NSLALPFQVD 180 INEKSEKDGF AEQTGQIECK YYLSPGGCKY GKACRYSHSK EKSRYLEKSE LPPPELNFLG 240 LPIRMLEKEC PYYMRNGSCA YGSSCRFNHP DPTAAEGSST FRSDPSGSGD HSPGNYNGGF 300 DALPSTELTA PSLSLNMMSN EHLKCLNQNS AYAHGMHANS EWSGHQVACS HFSQPMFHYC 360 FI*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MGSYEEHSPV QREPPNETQP ESLSGFNSNT LLSNLYPGRE KQEEIIVRDL KSVTLEENDW  60
NGYGDNNNNS NENLQVEWQN GKNCQYPLRP YAENCSFYLK SGNCKFGSCC KFNHPVPRTI  120
KDKENHLGLA TDQKKQIECK YYRATGGCKY GNACRYRHSN EDYVLAPLEV NSLALPFQVD  180
INEKSEKDGF AEQTGQIECK YYLSPGGCKY GKACRYSHSK EKSRYLEKSE LPPPELNFLG  240
LPIRMLEKEC PYYMRNGSCA YGSSCRFNHP DPTAAEGSST FRSDPSGSGD HSPGNYNGGF  300
DALPSTELTA PSLSLNMMSN EHLKCLNQNS AYAHGMHANS EWSGHQVACS HFSQPMFHYC  360
FI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483895.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
TrEMBL	A0A0D2RPX2	0.0	A0A0D2RPX2_GOSRA; Uncharacterized protein
STRING	Gorai.006G036900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-36	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G036900.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]