PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G036900.1
Common NameB456_006G036900, LOC105798394
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 457aa    MW: 51634.6 Da    PI: 6.7999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G036900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.6e-1093115426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e+C+f++++G Ck+G+ CkF+H+
  Gorai.006G036900.1  93 ENCSFYLKSGNCKFGSCCKFNHP 115
                         89********************9 PP
2zf-CCCH261.6e-08135159226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         k+ +C+++++tG CkyG+ C++ H+
  Gorai.006G036900.1 135 KQIECKYYRATGGCKYGNACRYRHS 159
                         7779******************997 PP
3zf-CCCH22.71.8e-07198220527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C++++  G CkyG  C+++H++
  Gorai.006G036900.1 198 ECKYYLSPGGCKYGKACRYSHSK 220
                         7********************95 PP
4zf-CCCH36.21e-11248270426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C++++r+G C yG++C+F+H+
  Gorai.006G036900.1 248 KECPYYMRNGSCAYGSSCRFNHP 270
                         68********************9 PP
5zf-CCCH32.11.9e-10384410127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Cky + CkF+H++
  Gorai.006G036900.1 384 PGEPECPYFMKTGSCKYKSACKFHHPK 410
                         5799*********************96 PP
6zf-CCCH23.59.8e-08427453127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C ++ ++G+CkyG+ C F+H++
  Gorai.006G036900.1 427 PDRRICWNYEKSGICKYGSICYFHHPE 453
                         5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.06789116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.54489117IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-693115IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6135163IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-7139163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021193220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577193221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5198224IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-6198220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5199221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802244272IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5246271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6247272IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9248270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5250269IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5383410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427383411IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8385410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5388411IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4389408IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962426454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6427454IPR000571Zinc finger, CCCH-type
SMARTSM003560.29428453IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5428453IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGSYEEHSPV QREPPNETQP ESLSGFNSNT LLSNLYPGRE KQEEIIVRDL KSVTLEENDW  60
NGYGDNNNNS NENLQVEWQN GKNCQYPLRP YAENCSFYLK SGNCKFGSCC KFNHPVPRTI  120
KDKENHLGLA TDQKKQIECK YYRATGGCKY GNACRYRHSN EDYVLAPLEV NSLALPFQVD  180
INEKSEKDGF AEQTGQIECK YYLSPGGCKY GKACRYSHSK EKSRYLEKSE LPPPELNFLG  240
LPIRMLEKEC PYYMRNGSCA YGSSCRFNHP DPTAAEGSST FRSDPSGSGD HSPGNYNGGF  300
DALPSTELTA PSLSLNMMSN EHLKCLNQNS AYAHGMHANS EWSGHQEKTS NPYLAPSIDK  360
AMKTLDISEL HQEQIQVNEF PERPGEPECP YFMKTGSCKY KSACKFHHPK TRIPEPILSS  420
AGLPLRPDRR ICWNYEKSGI CKYGSICYFH HPENLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483896.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X2
TrEMBLA0A0D2Q2R40.0A0A0D2Q2R4_GOSRA; Uncharacterized protein
STRINGGorai.006G036900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-68C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]