PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G034600.2
Common NameB456_006G034600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 444aa    MW: 50013.7 Da    PI: 5.3346
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G034600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.78.4e-311152571128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp+G++F+P+d+el+ ++L++k+   +      ++++   + e+ +i++++P++Lp  ++++ ++++fF+++ ++y+tg+rk+r+      
  Gorai.006G034600.2 115 LPVGVKFDPSDSELL-DHLAAKCGVGDskehlfIDEFILtLGECqGICYTHPENLP-GARKDGSSIHFFHRTINAYSTGQRKRRKiqnqdn 203
                         799************.899999877774455554443344777778**********.555678899******************8677777 PP

                 NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                            ++ +W++tgk+k+v++ +g ++g kk++v+yk   +  k+ek++Wvmh+y+l
  Gorai.006G034600.2 204 tnEEHVRWHKTGKTKPVTE-NGVHKGWKKIMVLYKStkKGCKPEKSNWVMHQYHL 257
                         5544899***********9.999***********6422556788*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-35102276IPR003441NAC domain
PROSITE profilePS5100529.247115276IPR003441NAC domain
PfamPF023652.0E-13116257IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MKLEIRSCQV LKHSSDKEPN FVSEPNGSGP AFKELKSFAY TLFSIHHSSS SSSSPFFTLL  60
MARSWLVDSR AIAKKVKNAS WSSSVQITDC GANRECPNCL YRIDNSDVFP QWPGLPVGVK  120
FDPSDSELLD HLAAKCGVGD SKEHLFIDEF ILTLGECQGI CYTHPENLPG ARKDGSSIHF  180
FHRTINAYST GQRKRRKIQN QDNTNEEHVR WHKTGKTKPV TENGVHKGWK KIMVLYKSTK  240
KGCKPEKSNW VMHQYHLGDT EDEHDGEYVV SKIFYQQQKQ TEKNDDSPIT EEPDNLMIRT  300
SPRTPKTITP DPPRPWKSMI LDDIEENMHQ EAKFAVERSD VHTDAVQCED NSHYPAWLAG  360
ESQAVENPDF NGFDEFLLCN ELLDSSSLPT TNDPKADGAA IETKGNNDAS CGISELENLE  420
FDTPPDDLQF GSQESILSWL DRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8471960.0KC847196.1 Gossypium hirsutum NAC domain protein NAC19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483861.10.0PREDICTED: NAC domain-containing protein 8-like isoform X2
TrEMBLA0A0D2SRG70.0A0A0D2SRG7_GOSRA; Uncharacterized protein
STRINGGorai.006G034600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-102NAC domain containing protein 44
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]