PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G033100.2 | ||||||||
Common Name | B456_006G033100, LOC105797835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 17780 Da PI: 5.2177 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.4 | 2.4e-43 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++p+ +reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ Gorai.006G033100.2 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPTFQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVITLQ 100 7****************************************************************************************** PP DUF260 92 aelallkee 100 el++++++ Gorai.006G033100.2 101 RELDATNAN 109 ***998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.106 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-43 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MSSSSYSSSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVPT 60 FQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVITLQ RELDATNANL FRYAYNEMPP 120 LRPPQPPPPS AAGQSSGFCY PYQWNDPSDE DNERSSGGNM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-63 | 7 | 118 | 8 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-63 | 7 | 118 | 8 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483194.1 | 1e-116 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_012483195.1 | 1e-116 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 2e-64 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0D2SRF0 | 1e-114 | A0A0D2SRF0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G033100.1 | 1e-115 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 5e-64 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G033100.2 |
Entrez Gene | 105797835 |
Publications ? help Back to Top | |||
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