PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G030800.1
Common NameB456_006G030800, LOC105798327
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 214aa    MW: 24905 Da    PI: 7.546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G030800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-171562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l+++++ +G g W+  a+  g++Rt+k+c++rw++yl
  Gorai.006G030800.1 15 KGPWTMEEDLILINYIATHGEGVWNNLAKAAGLKRTGKSCRLRWLNYL 62
                        79********************************************97 PP
2Myb_DNA-binding55.61.3e-1768111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Gorai.006G030800.1  68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-23765IPR009057Homeodomain-like
PROSITE profilePS5129415.9711062IPR017930Myb domain
SuperFamilySSF466891.12E-3013109IPR009057Homeodomain-like
SMARTSM007171.8E-131464IPR001005SANT/Myb domain
PfamPF002496.8E-161562IPR001005SANT/Myb domain
CDDcd001672.21E-101762No hitNo description
PROSITE profilePS5129425.85963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2566117IPR009057Homeodomain-like
SMARTSM007171.8E-1567115IPR001005SANT/Myb domain
PfamPF002491.7E-1668111IPR001005SANT/Myb domain
CDDcd001674.14E-1272111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDKKPCKSQD VEVRKGPWTM EEDLILINYI ATHGEGVWNN LAKAAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHINKQ  120
AETFSFHIST PELLDNQAST SQLPCNGSTS FMETYSPMSS FNHCNLEPFP GQQQEVQQQQ  180
QQQPQQQQIV DQPNNESYWS MEDFWSMQLL NGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-261211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483815.11e-161PREDICTED: myb-related protein 305-like
SwissprotP813917e-93MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0D2RPH51e-159A0A0D2RPH5_GOSRA; Uncharacterized protein
STRINGGorai.006G030800.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.18e-88myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]