PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G025100.1
Common NameB456_006G025100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 388aa    MW: 44178 Da    PI: 9.1605
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G025100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.7e-1164120155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV+ ++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Gorai.006G025100.1  64 SRFRGVSKHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 120
                         789******************88887784446666.99***9**************98 PP
2AP253.84.9e-17163214155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Gorai.006G025100.1 163 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAARAYDIAAIEYRG 214
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-764120IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1464130IPR016177DNA-binding domain
PROSITE profilePS5103217.99165128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-1265129IPR001471AP2/ERF domain
SMARTSM003805.8E-1965134IPR001471AP2/ERF domain
PRINTSPR003672.9E-56677IPR001471AP2/ERF domain
PfamPF008471.6E-12163214IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-18163224IPR016177DNA-binding domain
CDDcd000185.64E-25163224No hitNo description
PROSITE profilePS5103218.927164222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18164223IPR001471AP2/ERF domain
SMARTSM003801.2E-26164228IPR001471AP2/ERF domain
PRINTSPR003672.9E-5204224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEMIMVKDES YQRRRRMSSV YGDVQAVKCV KRRRRDRSDV NQGLQQNDQS SNAPAAAITV  60
KRSSRFRGVS KHRWTGRYEA HLWDKLSWNV TQKKKGKQGA YDDEEAAARA YDLAALKYWG  120
TSTSTNFPIS DYEKEIEVMQ TVTKEEFLAS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR  180
IGRVFGNKYL YLGTYNTQEE AARAYDIAAI EYRGINAVTN FDLSTYVGWL RPGMTNNYRI  240
AANETPATVE PESVQSTSCY SPIEESKPSI HYPFATDYFN SPQKQQHVVE TKLPVSYKSS  300
SPTALSLLLR SSVFRELVEK NANNVSEDES SNSDADNEQK NQQSGRSDHS DEFGRLFYDE  360
IGSGFSLFFS PTKDSIQLQE NELPFVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRMSSVYGDVQAVKCVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483185.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2Q2500.0A0A0D2Q250_GOSRA; Uncharacterized protein
STRINGGorai.006G025100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-77AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]