PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G022100.1
Common NameB456_006G022100, LOC105798232
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 276aa    MW: 31286.2 Da    PI: 6.6728
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G022100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-1879131456
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Gorai.006G022100.1  79 KKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWK 131
                         4568889*********************************************9 PP
2HD-ZIP_I/II128.23.4e-4177167191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekk+rl+ eqvk+LE+sFe  +kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLk++++alk++n++L++++++L++el
  Gorai.006G022100.1  77 EKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKKQFEALKADNDALQAQNKKLNAEL 167
                         69**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.46E-1969135IPR009057Homeodomain-like
PROSITE profilePS5007116.76373133IPR001356Homeobox domain
SMARTSM003891.0E-1776137IPR001356Homeobox domain
CDDcd000861.62E-1678134No hitNo description
PfamPF000463.3E-1579131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-1981141IPR009057Homeodomain-like
PRINTSPR000319.4E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000319.4E-6113129IPR000047Helix-turn-helix motif
PfamPF021834.4E-14133173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAFPPHAFMF QPHEDHHNDH LPSPTSLNFL PSCPPQLFHG GGAPFMMKRS VSFSGVDKSE  60
EVHGDDELSD DGSHLGEKKK RLNLEQVKAL EKSFELGNKL EPERKVQLAK ALGLQPRQIA  120
IWFQNRRARW KTKQLEKDYD ALKKQFEALK ADNDALQAQN KKLNAELLAL KTKDSNETSC  180
IKKENDCSWS YGSENNSCDV NLDVSRTPLM SSSKHLFPPS VRPTSMTQLL QGSSRPDLQC  240
VKLDQVVQEE SFCNMFNGVD EQQGFWPWSE QQSFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1513090.0EF151309.1 Gossypium hirsutum homeobox protein (HB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483678.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ8LAT05e-98ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A0D2RP620.0A0A0D2RP62_GOSRA; Uncharacterized protein
STRINGGorai.006G022100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-91homeobox protein 20
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]