PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G017200.1

Common Name

B456_006G017200, LOC105798189

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 327aa MW: 35787.5 Da PI: 7.8397

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G017200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	109.7	1.6e-34	59	115	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++ Gorai.006G017200.1 59 VVTYKECLKNHAATLGGHALDGCGEFMPSPSATpSDPTSLKCAACGCHRNFHRRESD 115 589***************************99******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-17	60	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.2E-29	60	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.1E-31	61	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.137	62	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.52E-19	200	270	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-30	202	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.6E-26	209	266	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEIAPTSTPP LSTTTPKSPD PETETPVRIQ PAKPKSFTNG VLKRHQPHHH YLHHAPPIVV 60 TYKECLKNHA ATLGGHALDG CGEFMPSPSA TPSDPTSLKC AACGCHRNFH RRESDDPPPT 120 TTATATIEYQ PHHRHHPPPP ASQAPHRSPN SASPPPISSS YYPSAPHMLL ALSGGLAGAL 180 DNNHHQNNSH LQGLGTLTPN TTNLGSHSKK RFRTKFTQFQ KDKMLEFAEK VGWKIQKRDE 240 EAIQEFCSEV GVDRGVLKVW MHNNKNTFGK KDQAINGGET GNNNNIENEL SHEDHHHHNN 300 NNGQNLNHHF ETDSVVHVGT NGSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-23	208	267	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483620.1	0.0	PREDICTED: zinc-finger homeodomain protein 9
Refseq	XP_016672954.1	0.0	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	4e-81	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A0D2Q1Y0	0.0	A0A0D2Q1Y0_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8IB02	0.0	A0A1U8IB02_GOSHI; zinc-finger homeodomain protein 9-like
STRING	Gorai.006G017200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	5e-36	homeobox protein 34

Link Out ? help Back to Top
Phytozome	Gorai.006G017200.1
Entrez Gene	105798189

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]