PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G016100.1 | ||||||||
Common Name | B456_006G016100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 98aa MW: 11071.5 Da PI: 7.9293 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.3 | 2.3e-16 | 16 | 55 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gC+Ck+skClkkYCeC+ a++ Cs+ C+CedC N+ Gorai.006G016100.1 16 RHKRGCKCKRSKCLKKYCECYRAKVGCSDGCHCEDCDNSF 55 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 17.685 | 1 | 56 | IPR005172 | CRC domain |
SMART | SM01114 | 5.7E-15 | 16 | 57 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.4E-12 | 18 | 54 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MFETGDENLM NTPSARHKRG CKCKRSKCLK KYCECYRAKV GCSDGCHCED CDNSFGKKSE 60 SMFQRVEKQQ NQSHEVLNTT QVMSDSTLVG ITNPFFE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483597.1 | 4e-59 | PREDICTED: uncharacterized protein LOC105798177 isoform X1 | ||||
Refseq | XP_012483599.1 | 1e-59 | PREDICTED: uncharacterized protein LOC105798177 isoform X2 | ||||
Refseq | XP_012483600.1 | 5e-60 | PREDICTED: protein tesmin/TSO1-like CXC 7 isoform X3 | ||||
Swissprot | Q8L548 | 2e-19 | TCX3_ARATH; Protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A0D2Q1X0 | 4e-66 | A0A0D2Q1X0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G016100.1 | 7e-67 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15696 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 7e-22 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G016100.1 |
Publications ? help Back to Top | |||
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