PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G016100.1
Common NameB456_006G016100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 98aa    MW: 11071.5 Da    PI: 7.9293
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G016100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.32.3e-161655140
                 TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                        ++k+gC+Ck+skClkkYCeC+ a++ Cs+ C+CedC N+ 
  Gorai.006G016100.1 16 RHKRGCKCKRSKCLKKYCECYRAKVGCSDGCHCEDCDNSF 55
                        589***********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163417.685156IPR005172CRC domain
SMARTSM011145.7E-151657IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-121854IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MFETGDENLM NTPSARHKRG CKCKRSKCLK KYCECYRAKV GCSDGCHCED CDNSFGKKSE  60
SMFQRVEKQQ NQSHEVLNTT QVMSDSTLVG ITNPFFE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483597.14e-59PREDICTED: uncharacterized protein LOC105798177 isoform X1
RefseqXP_012483599.11e-59PREDICTED: uncharacterized protein LOC105798177 isoform X2
RefseqXP_012483600.15e-60PREDICTED: protein tesmin/TSO1-like CXC 7 isoform X3
SwissprotQ8L5482e-19TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBLA0A0D2Q1X04e-66A0A0D2Q1X0_GOSRA; Uncharacterized protein
STRINGGorai.006G016100.17e-67(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15696813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.17e-22Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]