PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G015500.1

Common Name

B456_006G015500, LOC105798170

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 459aa MW: 51183.9 Da PI: 6.6558

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G015500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.4e-38	135	194	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +k l+cprC+s++tkfCyynny++sqPr+fCk+C+ryWt+GG++rnvPvG+grr++k+ss Gorai.006G015500.1 135 NKVLPCPRCNSMDTKFCYYNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRSKNSS 194 67899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	131	191	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	136	192	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	138	192	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	140	176	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MMEPNDLTIK LFGKTIPLPV KSPKAVVAAT ISNIYATCDD ACNHNNNYKK DIVTDKTIDA 60 EHELGDRKED RSKQDGTAPL VASEEFTNLE VTYGPSDKRD ALSIENESTG LETCKTDEDR 120 NETSNPEEKT LKKLNKVLPC PRCNSMDTKF CYYNNYNVSQ PRHFCKNCQR YWTAGGTMRN 180 VPVGAGRRRS KNSSSHYRHV IVSEPLRNAC DDETMCNTTQ NRFHKPEELN IHVSYRGGKN 240 GVEHLNGSSI ATSNDEVYKA GSQDQMMQNC RSFPPHMPCF PGFFLPYSWN SARWSSPLPP 300 PTFCPPSFSM PFYPTAPYWG CALPTSWNVP WLPQPSSEMQ TAPSSGSNSP SLGKHSRDED 360 MGKPCSIGED EPVNENNAER CLWISKTLRI DDPGEASRSS IWVTSSSKND KLDSIGDERL 420 FKGFQSKGDK RNQVLETSPI LQASPAASSR SINFQESS*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MMEPNDLTIK LFGKTIPLPV KSPKAVVAAT ISNIYATCDD ACNHNNNYKK DIVTDKTIDA  60
EHELGDRKED RSKQDGTAPL VASEEFTNLE VTYGPSDKRD ALSIENESTG LETCKTDEDR  120
NETSNPEEKT LKKLNKVLPC PRCNSMDTKF CYYNNYNVSQ PRHFCKNCQR YWTAGGTMRN  180
VPVGAGRRRS KNSSSHYRHV IVSEPLRNAC DDETMCNTTQ NRFHKPEELN IHVSYRGGKN  240
GVEHLNGSSI ATSNDEVYKA GSQDQMMQNC RSFPPHMPCF PGFFLPYSWN SARWSSPLPP  300
PTFCPPSFSM PFYPTAPYWG CALPTSWNVP WLPQPSSEMQ TAPSSGSNSP SLGKHSRDED  360
MGKPCSIGED EPVNENNAER CLWISKTLRI DDPGEASRSS IWVTSSSKND KLDSIGDERL  420
FKGFQSKGDK RNQVLETSPI LQASPAASSR SINFQESS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ567176	3e-93	AJ567176.1 Gossypium hirsutum microsatellite DNA mGhCIR230, clone CIR230.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483587.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A0D2NKG9	0.0	A0A0D2NKG9_GOSRA; Uncharacterized protein
STRING	Gorai.006G015500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24746	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-79	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Gorai.006G015500.1
Entrez Gene	105798170

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]