PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G015200.2 | ||||||||
Common Name | B456_006G015200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 31471.6 Da PI: 9.793 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W + Ed +l+++v+++G+ +W++Ia++++ gRt+k+c++rw+++l Gorai.006G015200.2 89 RGHWKPAEDSKLKELVTLYGPQNWNLIAEKFQ-GRTGKSCRLRWFNHL 135 899*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.5e-18 | 141 | 184 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ Gorai.006G015200.2 141 KKAFTEEEEERLMAAHRAYGNK-WAMIARLFP-GRTDNAVKNHWHV 184 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.553 | 84 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-15 | 88 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 89 | 135 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 89 | 182 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-27 | 90 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-13 | 92 | 135 | No hit | No description |
PROSITE profile | PS51294 | 26.515 | 136 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 140 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 141 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.48E-11 | 143 | 183 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-22 | 143 | 189 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MKMTLQQFHN SSCFHHQENN GFSKYYTIYQ PPSNSSMEVL KPIEGFSYCL EDHFSKGSEM 60 GAVSMSVVRG RSEFFLNGKD VGVSKICSRG HWKPAEDSKL KELVTLYGPQ NWNLIAEKFQ 120 GRTGKSCRLR WFNHLDPRIN KKAFTEEEEE RLMAAHRAYG NKWAMIARLF PGRTDNAVKN 180 HWHVIMSRKY REQASAYRRR KLSQAAIGDF TDSTQNPYLA SFVGPNGSYN KGSTSRKEDE 240 INGGDLFLGS KSKSFKACEN STPLDFFSGL FLLVPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-34 | 89 | 189 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM052725 | 0.0 | KM052725.1 Gossypium hirsutum LOF-like transcription factor LOF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483585.1 | 0.0 | PREDICTED: myb-related protein MYBAS1-like | ||||
TrEMBL | A0A0D2Q1I9 | 0.0 | A0A0D2Q1I9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G015200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 8e-75 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G015200.2 |
Publications ? help Back to Top | |||
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