PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.006G009800.2 | ||||||||
Common Name | B456_006G009800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 249aa MW: 28000.7 Da PI: 10.2346 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.8 | 1e-30 | 52 | 132 | 2 | 74 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec..e 74 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++ s++ Gorai.006G009800.2 52 FGGKDRHSKVYTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPPpanfpiSDAfwR 132 689*************************************************************66666333322111221 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.004 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.5E-28 | 54 | 139 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MISSSKNTDF PTRQDEDDDK RNETNKGPSS SSSSSQWLRL KDPRIVRVSR AFGGKDRHSK 60 VYTIRGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAAKHEID ELPPLPMPPP 120 PANFPISDAF WRTKSKEVTR DVIDDKDDKH RRNEVHAPQV DNFNVVAAPL PSALSLCPLP 180 PPQPGGGAPP LFPPHVVDPR QQVNHFQMLS SGAQQNLLLN SLNFPPITQS FRPFQLMPPR 240 FPHNQPDK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gra.150 | 1e-162 | flower|seedling| flowering |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ527708 | 1e-142 | HQ527708.1 Gossypium herbaceum clone NBRI_A_8683 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016668162.1 | 1e-142 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_016668163.1 | 1e-142 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_016668164.1 | 1e-142 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_017608896.1 | 1e-142 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_017608897.1 | 1e-142 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_017608898.1 | 1e-142 | PREDICTED: transcription factor TCP13-like | ||||
TrEMBL | A0A0D2RVE4 | 1e-178 | A0A0D2RVE4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G009800.1 | 1e-142 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-41 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.006G009800.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|