PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G009800.1

Common Name

B456_006G009800, LOC105798109

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 286aa MW: 32029.8 Da PI: 7.9301

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G009800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99	8.6e-31	52	137	2	79
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec..eaesss 79 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++ s++ ++s++ Gorai.006G009800.1 52 FGGKDRHSKVYTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPPpanfpiSDAfwRTKSKE 137 689*************************************************************6666533333311123111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	31.004	54	112	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.9E-28	54	145	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MISSSKNTDF PTRQDEDDDK RNETNKGPSS SSSSSQWLRL KDPRIVRVSR AFGGKDRHSK 60 VYTIRGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAAKHEID ELPPLPMPPP 120 PANFPISDAF WRTKSKEVTR DVIDDKDDKH RRNEGDDDDD HGTQHVSSGS YYHFEPSNFP 180 LSSHLVSHGF AVHAPQVDNF NVVAAPLPSA LSLCPLPPPQ PGGGAPPLFP PHVVDPRQQV 240 NHFQMLSSGA QQNLLLNSLN FPPITQSFRP FQLMPPRFPH NQPDK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	8e-19	59	113	1	55	Putative transcription factor PCF6
5zkt_B	8e-19	59	113	1	55	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.150	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527708	1e-142	HQ527708.1 Gossypium herbaceum clone NBRI_A_8683 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483482.1	0.0	PREDICTED: transcription factor TCP13-like
Refseq	XP_012483483.1	0.0	PREDICTED: transcription factor TCP13-like
Refseq	XP_012483484.1	0.0	PREDICTED: transcription factor TCP13-like
TrEMBL	A0A0D2SQ97	0.0	A0A0D2SQ97_GOSRA; Uncharacterized protein
STRING	Gorai.006G009800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28269	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	1e-40	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Gorai.006G009800.1
Entrez Gene	105798109

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]