PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G008700.1
Common NameB456_006G008700, LOC105798094
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 905aa    MW: 99917 Da    PI: 6.5104
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G008700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23128229199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Gorai.006G008700.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 215
                         99*****************************96555555..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Gorai.006G008700.1 216 -WNDKNQLLLGIRRA 229
                         .7888889****997 PP
2Auxin_resp121.75.4e-40254337183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Gorai.006G008700.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAIShTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-21127228No hitNo description
SMARTSM010193.0E-24128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492128230IPR003340B3 DNA binding domain
PfamPF023621.3E-21128229IPR003340B3 DNA binding domain
PfamPF065078.7E-35254337IPR010525Auxin response factor
SuperFamilySSF542774.51E-7756838No hitNo description
PfamPF023092.1E-5757846IPR033389AUX/IAA domain
PROSITE profilePS5174522.7764848IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MRLSSSGLNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAISH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS TLPSFHAFKD GDMSINSQLM WLQGGVGDQG LQSLNFQGFG  420
VAPWMQPRLD TSSIPGVQPD LYQAMVTAAL QDMRTVDSSK IGSQSLLQCQ QNQSTSTGSP  480
ALVQRQMLQQ SQTQNGFLPS FQENQTASQV QLLQQLQCPN LYNDQRQKQQ QRQSQETQQL  540
PPVPQQISDV IPAFPSVSAN QAQSSLPAVD SQCQQSTFSD HLGNSIATSD VSSMQSILGS  600
LSQMGASHLL NLNGSNPILS SSTFLSKPAA IEPRLSSRVA NSVLPQVEQL GTAQSNASEL  660
HNLLPPFPGR EYSAYHNATD PQNNLLFGVS IDSSSLMLHH GMTNPKSIRN ENDSMSLPYA  720
ASNFTSASGT DFPLNSDMTA SSCVDESGYL QSSENVDQVN PPTGTFVKVH KSGSFGRSLD  780
ISKFGSYDEL RCELARLFGL ERQLEDPQRS GWQLVFVDRE NDILLLGDDP WQEFVNNVWY  840
IKILSPLEVQ QMGKGQNPAT SIPNQRLNAT TTATTSSSNG NHCGDYMSRQ DLRSSVASMG  900
SLEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641135841388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.14480.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488001620.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483462.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0D2Q1F50.0A0A0D2Q1F5_GOSRA; Auxin response factor
STRINGGorai.006G008700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]