PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G005400.1

Common Name

B456_006G005400, LOC105798051

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 203aa MW: 22849.3 Da PI: 7.5546

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G005400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.6	5.8e-56	33	128	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yv plk+yl+kyre Gorai.006G005400.1 33 KEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVGPLKLYLTKYRE 123 89*************************************************************************************** PP NF-YB 93 legek 97 +egek Gorai.006G005400.1 124 IEGEK 128 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.9E-53	28	150	IPR009072	Histone-fold
SuperFamily	SSF47113	4.97E-40	35	143	IPR009072	Histone-fold
Pfam	PF00808	5.2E-28	38	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.5E-19	66	84	No hit	No description
PROSITE pattern	PS00685	0	69	85	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.5E-19	85	103	No hit	No description
PRINTS	PR00615	4.5E-19	104	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MEDENAAHGH NKGSPESPCA KSGGSSNNNN NNKEQDRFLP IANVGRIMKK VIPSNGKISK 60 DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGDDIIW AITTLGFEEY VGPLKLYLTK 120 YREIEGEKLN LPKQQRSEQK QHQQSKHEQN IAFNTNVYSS TNLLSRHTSF VPSDQPFSLP 180 FSSNNIQKQL QQQDQIDSVG YW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-44	33	123	3	93	NF-YB
4awl_B	1e-44	33	123	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-44	33	123	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B	1e-44	33	123	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-44	33	123	2	92	Transcription factor HapC (Eurofung)
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483393.1	1e-150	PREDICTED: nuclear transcription factor Y subunit B-7
Refseq	XP_016718692.1	1e-150	PREDICTED: nuclear transcription factor Y subunit B-7-like
Swissprot	Q9SIT9	7e-70	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A0D2RMZ8	1e-149	A0A0D2RMZ8_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LVZ7	1e-149	A0A1U8LVZ7_GOSHI; nuclear transcription factor Y subunit B-7-like
STRING	Gorai.006G005400.1	1e-150	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	1e-65	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	Gorai.006G005400.1
Entrez Gene	105798051

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]