PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G264500.1 | ||||||||
Common Name | B456_005G264500, LOC105795503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14615.1 Da PI: 10.4371 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.8e-17 | 9 | 102 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 +l++ d +rl++p k + ++ +g+ ++ + +desg W++++ y++k++r vltkGW+eFv ++L gD v F+++++ Gorai.005G264500.1 9 QLKTTDIE--KRLTIPSKSL-KYfpplDGN--HVVQFKARDESGHHWKFQI-YTRKGKRylkPVLTKGWREFVCTKELTIGDKVEFYMEEK 93 55444444..569*******.566*87555..45679999***********.766666658889***********************9866 PP SEE..EEEE CS B3 88 sefelvvkv 96 +++e + +v Gorai.005G264500.1 94 EQGEAMYSV 102 665554433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.052 | 4 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-19 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.35E-15 | 5 | 106 | No hit | No description |
SMART | SM01019 | 2.8E-4 | 6 | 108 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-13 | 7 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-13 | 15 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MTKAIVSKQL KTTDIEKRLT IPSKSLKYFP PLDGNHVVQF KARDESGHHW KFQIYTRKGK 60 RYLKPVLTKG WREFVCTKEL TIGDKVEFYM EEKEQGEAMY SVRVFRAVRI FGRIVAYVLD 120 HKSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480603.1 | 2e-88 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A0D2RLS9 | 5e-87 | A0A0D2RLS9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G264500.1 | 8e-88 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16920 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 2e-09 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G264500.1 |
Entrez Gene | 105795503 |
Publications ? help Back to Top | |||
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