PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G259700.3

Common Name

B456_005G259700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 286aa MW: 31403 Da PI: 7.6326

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G259700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.5	1.9e-15	214	258	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++++r++kNRe+A rsR+RK+a++ eLe v Le+eN +L+ e Gorai.005G259700.3 214 QQKQKRMIKNRESAARSRERKQAYTVELESMVTHLEEENARLRRE 258 689***************************************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-10	211	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.967	213	258	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.5E-13	213	258	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.19E-10	215	258	No hit	No description
CDD	cd14707	7.93E-22	215	266	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-14	216	258	No hit	No description
PROSITE pattern	PS00036	0	218	233	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MASSKVITTT SQTNPDVTRQ PSLCSSLSTL FADLQNQQNN NENRSQNCFG SMSMDDLLKN 60 IYPSTPPPPP STTGNTGSDA HHAQFLGGSI SREGSFSLPK DVASKSVDEV WKEIVAGGGD 120 QRQEGQLEEM TLEDFLTKAG AVREEDVSRG VVNQVSAGVF HVEPAVINGG GSQFSTFGNN 180 GGVDHQRLVV VPAGGGGRGK RRAVEEPPLD KATQQKQKRM IKNRESAARS RERKQAYTVE 240 LESMVTHLEE ENARLRREEL MEKLVPVDEK QRPRRVIRRA RSMEW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632102.1	1e-171	PREDICTED: G-box-binding factor 4-like
TrEMBL	A0A0D2RLI5	0.0	A0A0D2RLI5_GOSRA; Uncharacterized protein
STRING	Gorai.005G259700.1	1e-168	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	1e-25	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G259700.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]