PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G259100.1
Common NameB456_005G259100, LOC105795452
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 783aa    MW: 87283.1 Da    PI: 7.5083
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G259100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.61.1e-27494544252
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ek+i l+dl+++F++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Gorai.005G259100.1 494 EKTIGLQDLRRHFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 544
                         799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557816.38E-5275390IPR029016GAF domain-like
PROSITE profilePS5151917.268483564IPR003035RWP-RK domain
PfamPF020421.4E-24497544IPR003035RWP-RK domain
SuperFamilySSF542772.52E-21678769No hitNo description
Gene3DG3DSA:3.10.20.2404.6E-21681765No hitNo description
SMARTSM006662.0E-23684767IPR000270PB1 domain
PROSITE profilePS5174523.546684767IPR000270PB1 domain
CDDcd064071.41E-38685766No hitNo description
PfamPF005645.2E-15685766IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MVFKNMEGDV GFYDDAAMDM DFIDELLFEG FNINSDRGQA SLDLCRSENR AVTSMSRLMQ  60
AVLYLKESTK GRDGVLIQIW VPVKKGDKHV LTTQGQPYSL NTNCKSLEIF RDVSESYSFP  120
AEEDSEGPIG LPGRVFLGKL PEWTPDVRFF RRDEYRRVGL AQKYNVGGSF ALPFFEQGSG  180
TCLGVVEIVS CTQKINYRPE LEHVCKALEA VDLRSSHCFT PPNVKGYNEL YRVALPEITE  240
VLRSICKRYE LPLALTWAPS QHSDKNFYCC VSTSGSFCFV ADEGLTGFLE ACSEHQLFRG  300
QGIVGRAFTT NKQCFATDIT AFSKTNYPLS HHARMFGLRA AVAIPLQSAF TGSVVFVLEL  360
FLPKDCHDSE AQKRMINSLS GFMQQACRSL QVIVDKELEE EVILPVKEMF KSNKKETEVR  420
IFSSKEDSPV ESSSWIAHMM EAQEKGKGIS SSWEYKKELD FRQVHQHART NRVDSGHQVL  480
DGKKAGEKKR KKTEKTIGLQ DLRRHFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK  540
IKKVGHSLRK LQVVIESVQG AEGAIQIGSF YSSFPELSSP NFSNNVPSST LKLSNHSMSS  600
EPRLETAMFS QEATASKSPL SSSSQSSGSS TCCSSGAKQQ STRINALGGM EDPGGPLKSV  660
IGDAKLHASN QHEMKLLQHQ TGGDLRVKAM FGQVKLLFGL QPNWGFIDLQ REIAKHFNIE  720
DVDRINLKYL DDDNEWVLLT CDADLEECID IYKSSQTHTI KISLHQASNL NLGSSFGYSD  780
PL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487491KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480535.10.0PREDICTED: protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A0D2RLH80.0A0A0D2RLH8_GOSRA; Uncharacterized protein
STRINGGorai.005G259100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.10.0Nin-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]