PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G248900.6

Common Name

B456_005G248900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 408aa MW: 44673.2 Da PI: 6.3369

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G248900.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.8e-10	265	322	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l+++ Gorai.005G248900.6 265 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 322 9********************************************9998877666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.8E-18	261	325	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	263	326	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.6E-11	265	321	No hit	No description
SuperFamily	SSF57959	1.97E-11	265	316	No hit	No description
Pfam	PF00170	5.5E-9	265	319	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.14E-24	266	315	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MEDSHSLLPP SPFPKASSPR VGESLPPRKS HRRSNSDIPF GFNTVMQSSP PPLRGSGFEN 60 SGVPRPVQLV KKETSWERGI DGNVEGMGER KSEGEVMDDL FSAYMNLDNI DALNSSEDKN 120 NNNENHEDLD SRASGTKTNG GDSSDNEAES SVNESGNSVT QGGVYSTQKR EGNKRSAGGD 180 IAPTSRHYRS VSMDSFMGKL NFGDESPKLP PSPGSRPGQL SPSNSIDGNS AAFSLELGNG 240 EFNEAELKKI MANEKLAEIA MTDPKRAKRI LANRQSAARS KERKMRYISE LEHKVQTLQT 300 EATTLSAQLT LLQRDSVGLT NQNNELKFRI QSMEQQAQLR DALNETLTAE VHRLKLATQE 360 LGGNSDPSKG MVSQQLPISR QMFQLHQQQF HQQQQNGNTA AKSESNQ*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MEDSHSLLPP SPFPKASSPR VGESLPPRKS HRRSNSDIPF GFNTVMQSSP PPLRGSGFEN  60
SGVPRPVQLV KKETSWERGI DGNVEGMGER KSEGEVMDDL FSAYMNLDNI DALNSSEDKN  120
NNNENHEDLD SRASGTKTNG GDSSDNEAES SVNESGNSVT QGGVYSTQKR EGNKRSAGGD  180
IAPTSRHYRS VSMDSFMGKL NFGDESPKLP PSPGSRPGQL SPSNSIDGNS AAFSLELGNG  240
EFNEAELKKI MANEKLAEIA MTDPKRAKRI LANRQSAARS KERKMRYISE LEHKVQTLQT  300
EATTLSAQLT LLQRDSVGLT NQNNELKFRI QSMEQQAQLR DALNETLTAE VHRLKLATQE  360
LGGNSDPSKG MVSQQLPISR QMFQLHQQQF HQQQQNGNTA AKSESNQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480420.1	0.0	PREDICTED: transcription factor RF2a
Refseq	XP_012480421.1	0.0	PREDICTED: transcription factor RF2a
TrEMBL	A0A0D2PZB6	0.0	A0A0D2PZB6_GOSRA; Uncharacterized protein
STRING	Gorai.005G248900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-126	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G248900.6

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]