PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G248900.5 | ||||||||
Common Name | B456_005G248900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 473aa MW: 50930 Da PI: 6.5979 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.4 | 9.9e-11 | 414 | 461 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l Gorai.005G248900.5 414 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 461 9****************************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.0E-11 | 410 | 472 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.231 | 412 | 463 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.3E-11 | 414 | 463 | No hit | No description |
Pfam | PF00170 | 1.4E-9 | 414 | 461 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.24E-11 | 414 | 465 | No hit | No description |
CDD | cd14703 | 1.21E-25 | 415 | 463 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MGDSEEGNTD LMQRIQSSFG TSSSSIPKQV LSMNHLEIPP LNPNQIRAVR HFSHFGQNFN 60 GGGGGGGGGG DGNKRVGIPP SHPNQIPPIS PYSQIPVSRP SSHQMGSSQG FSPGPTHSRS 120 LSQPSSFFSF DSLPPLSPAP VTQISNDVCM EDSHSLLPPS PFPKASSPRV GESLPPRKSH 180 RRSNSDIPFG FNTVMQSSPP PLRGSGFENS GVPRPVQLVK KETSWERGID GNVEGMGERK 240 SEGEVMDDLF SAYMNLDNID ALNSSEDKNN NNENHEDLDS RASGTKTNGG DSSDNEAESS 300 VNESGNSVTQ GGVYSTQKRE GNKRSAGGDI APTSRHYRSV SMDSFMGKLN FGDESPKLPP 360 SPGSRPGQLS PSNSIDGNSA AFSLELGNGE FNEAELKKIM ANEKLAEIAM TDPKRAKRIL 420 ANRQSAARSK ERKMRYISEL EHKVQTLQTE ATTLSAQLTL LQRFSWAYQS EQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480420.1 | 0.0 | PREDICTED: transcription factor RF2a | ||||
Refseq | XP_012480421.1 | 0.0 | PREDICTED: transcription factor RF2a | ||||
TrEMBL | A0A0D2RL82 | 0.0 | A0A0D2RL82_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G248900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-105 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G248900.5 |
Publications ? help Back to Top | |||
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