PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.005G248900.1 | ||||||||
Common Name | B456_005G248900, LOC105795361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 557aa MW: 60289.4 Da PI: 6.7655 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.6 | 3.6e-10 | 414 | 471 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l+++ Gorai.005G248900.1 414 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 471 9********************************************9998877666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.8E-18 | 410 | 474 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.737 | 412 | 475 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.1E-9 | 414 | 468 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.32E-11 | 414 | 465 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.6E-11 | 414 | 470 | No hit | No description |
CDD | cd14703 | 7.00E-25 | 415 | 464 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 557 aa Download sequence Send to blast |
MGDSEEGNTD LMQRIQSSFG TSSSSIPKQV LSMNHLEIPP LNPNQIRAVR HFSHFGQNFN 60 GGGGGGGGGG DGNKRVGIPP SHPNQIPPIS PYSQIPVSRP SSHQMGSSQG FSPGPTHSRS 120 LSQPSSFFSF DSLPPLSPAP VTQISNDVCM EDSHSLLPPS PFPKASSPRV GESLPPRKSH 180 RRSNSDIPFG FNTVMQSSPP PLRGSGFENS GVPRPVQLVK KETSWERGID GNVEGMGERK 240 SEGEVMDDLF SAYMNLDNID ALNSSEDKNN NNENHEDLDS RASGTKTNGG DSSDNEAESS 300 VNESGNSVTQ GGVYSTQKRE GNKRSAGGDI APTSRHYRSV SMDSFMGKLN FGDESPKLPP 360 SPGSRPGQLS PSNSIDGNSA AFSLELGNGE FNEAELKKIM ANEKLAEIAM TDPKRAKRIL 420 ANRQSAARSK ERKMRYISEL EHKVQTLQTE ATTLSAQLTL LQRDSVGLTN QNNELKFRIQ 480 SMEQQAQLRD ALNETLTAEV HRLKLATQEL GGNSDPSKGM VSQQLPISRQ MFQLHQQQFH 540 QQQQNGNTAA KSESNQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480420.1 | 0.0 | PREDICTED: transcription factor RF2a | ||||
Refseq | XP_012480421.1 | 0.0 | PREDICTED: transcription factor RF2a | ||||
TrEMBL | A0A0D2RL84 | 0.0 | A0A0D2RL84_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G248900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4224 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-132 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.005G248900.1 |
Entrez Gene | 105795361 |
Publications ? help Back to Top | |||
---|---|---|---|
|