PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G247900.2

Common Name

B456_005G247900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 325aa MW: 35962.7 Da PI: 6.0696

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G247900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.5	7.5e-18	242	275	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g ktLCnaCG++y++ + Gorai.005G247900.2 242 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 275 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	5.8E-73	5	320	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	4.2E-14	236	290	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.33E-13	238	299	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.9E-14	240	274	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.332	240	272	IPR000679	Zinc finger, GATA-type
CDD	cd00202	1.62E-13	241	292	No hit	No description
PROSITE pattern	PS00344	0	242	267	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	9.6E-16	242	275	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MELCMEAKAL KSSVRGEFTK NSHNQNQHVA FDDFFSSNGG VSSEEFSVDC FFDFTNGEFE 60 EENEEKNSAL IFSQEERVTD DDSNSNSSSF SFDSGLTNEL SDDEIAGLEW VSQFVDDSFP 120 VLPFSCPVFK QQAENQPEAR FEPESAPVFV KTPCFSSPIP SKSRSKRAKP TGKTWPFGSF 180 SRFESSTSST TTASSSSTSS GFSISSTPTQ KPNLGDIIEP PTKKQRRKSV VQSNGNAFQR 240 RCSHCQVQKT PQWRTGPLGA KTLCNACGVR YKSGRLYPEY RPACSPTFSG DMHSNSHRKV 300 LEMRKKKELA GKEPDELTPV VPSF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480390.1	0.0	PREDICTED: GATA transcription factor 5-like
TrEMBL	A0A0D2PZ90	0.0	A0A0D2PZ90_GOSRA; GATA transcription factor
STRING	Gorai.005G247900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	2e-39	GATA transcription factor 5

Link Out ? help Back to Top
Phytozome	Gorai.005G247900.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]