PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G247900.1

Common Name

B456_005G247900, LOC105795349

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 327aa MW: 36158.9 Da PI: 6.0696

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G247900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.5	7.5e-18	244	277	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g ktLCnaCG++y++ + Gorai.005G247900.1 244 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 277 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	7.0E-77	5	322	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	4.2E-14	238	292	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.33E-13	240	301	No hit	No description
PROSITE profile	PS50114	11.332	242	274	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.9E-14	242	276	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.43E-13	243	294	No hit	No description
Pfam	PF00320	9.6E-16	244	277	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	244	269	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MELCMEAKAL KSSVRGEFTK NSHNQNQHVA FDDFFSSNGG VSSEEFSVDC FFDFTNGEFE 60 EENEEKNSAL IFSQEERVTD DDSNSNSSSF SFDSGLTNEL SVPDDEIAGL EWVSQFVDDS 120 FPVLPFSCPV FKQQAENQPE ARFEPESAPV FVKTPCFSSP IPSKSRSKRA KPTGKTWPFG 180 SFSRFESSTS STTTASSSST SSGFSISSTP TQKPNLGDII EPPTKKQRRK SVVQSNGNAF 240 QRRCSHCQVQ KTPQWRTGPL GAKTLCNACG VRYKSGRLYP EYRPACSPTF SGDMHSNSHR 300 KVLEMRKKKE LAGKEPDELT PVVPSF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480390.1	0.0	PREDICTED: GATA transcription factor 5-like
TrEMBL	A0A0D2NI24	0.0	A0A0D2NI24_GOSRA; GATA transcription factor
STRING	Gorai.005G247900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5739	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	2e-39	GATA transcription factor 5

Link Out ? help Back to Top
Phytozome	Gorai.005G247900.1
Entrez Gene	105795349

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]