PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G247100.1
Common NameB456_005G247100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 209aa    MW: 22905.6 Da    PI: 8.7988
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G247100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702101.21.8e-311372362
              DUF702  3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62
                         g+++CqdCGnqakkdC+++RCRtCC+s+gf+C+th+kstWvpa++rr+r++++++++  
  Gorai.005G247100.1 13 GGGTRCQDCGNQAKKDCNYMRCRTCCRSKGFECQTHIKSTWVPAYRRRHRHHHQHQQQPL 72
                        57789********************************************96665554332 PP
2DUF70275.81.2e-238214495154
              DUF702  95 eskkeletsslPeevsseavfrcvrvssvdd...geeelaYqtavsigGhvfkGiLydqGlee 154
                         ++++ le  ++P+ev s+a frcvrvss++d   g +++aY+tav igGhvfkGiLydqG+++
  Gorai.005G247100.1  82 NPSSGLEGGDFPAEVTSPATFRCVRVSSMEDttaGGDQYAYRTAVMIGGHVFKGILYDQGPDH 144
                         4556777888*********************6666789***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.2E-5115143IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-271859IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-2392142IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MMMSSRGYGG GTGGGTRCQD CGNQAKKDCN YMRCRTCCRS KGFECQTHIK STWVPAYRRR  60
HRHHHQHQQQ PLQHNPKRLR ENPSSGLEGG DFPAEVTSPA TFRCVRVSSM EDTTAGGDQY  120
AYRTAVMIGG HVFKGILYDQ GPDHGHYSLG ECSSRETPLQ QPNQALTMAT ANTATASATE  180
TLLPFAYPSP LNAAFMSAGT QFFLHPKS*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. Detected throughout the youngest flower primordium. Later relocalizes towards the regions of the presumptive sepal anlagen and remains in sepal primordia until just after their emergence. Also observed on the abaxial side of the young floral meristem. Present in the newly arisen gynoecial primordium. Restricted to the apical parts of the carpels as the open-ended gynoecial cylinder elongates vertically. In the apical regions of the gynoecium, confined to a zone in the interphase between the style and the stigma and fades out later. Within the gynoecium, accumulates in ovule primordia, and, as the ovules developed, restricted to the epidermis of the developing funiculi, to the outer, but not the inner, integuments and to the tip of the nucellus. Also present in the cell layer of the septum that faces the ovary. In the embryo, detected in the cotyledon primordia during late globular to mid heart stage. In addition, transiently expressed in petal and stamen primordia and in the tapetum of the anthers. {ECO:0000269|PubMed:12361963}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, seeds and seedlings. {ECO:0000269|PubMed:12361963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5793118e-89JX579311.1 Gossypium hirsutum clone NBRI_GE11521 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480379.11e-157PREDICTED: protein SHI RELATED SEQUENCE 3-like
SwissprotQ9SD401e-53SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A0D2NI211e-155A0A0D2NI21_GOSRA; Uncharacterized protein
STRINGGorai.005G247100.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.18e-47Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]