PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G241600.2

Common Name

B456_005G241600, LOC105795283

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 371aa MW: 41429.7 Da PI: 8.6302

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G241600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.1	3.8e-08	237	283	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ Gorai.005G241600.2 237 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 283 89***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.6E-4	226	285	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.98E-15	230	276	No hit	No description
SuperFamily	SSF57959	7.03E-6	237	279	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.3E-8	237	279	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MANSKGSTNI RNFMVSGKHA LLPPKSPFPT VSPAYTDYVP NSVIGSKAVQ KPREGNTHHQ 60 RTSSESLRME EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDASNSPN LDYAAQDEFR 120 YQNMINTPSW ASQDARLSSL YSDVNLVKQN RAWDSSLNVM THPSRLPSLR ENTFLQSLGS 180 SCAPRELEGA LSTASEKQDS AESPPPDAKA SSEKKDNSHT KSSTCDGDSK RAKQQFAQRS 240 RVRKLQYIAE LERNVQALQA EGSEVSAELE FLNQQNLILS MENKALKQRL EGLAQEKAIK 300 HFEQEVLERE LSRLRALYQQ QQNQPQQQQQ LSSTHRRSSS RDLDSQFANL SLNNKDANSG 360 STPVTGPLRI *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MANSKGSTNI RNFMVSGKHA LLPPKSPFPT VSPAYTDYVP NSVIGSKAVQ KPREGNTHHQ  60
RTSSESLRME EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDASNSPN LDYAAQDEFR  120
YQNMINTPSW ASQDARLSSL YSDVNLVKQN RAWDSSLNVM THPSRLPSLR ENTFLQSLGS  180
SCAPRELEGA LSTASEKQDS AESPPPDAKA SSEKKDNSHT KSSTCDGDSK RAKQQFAQRS  240
RVRKLQYIAE LERNVQALQA EGSEVSAELE FLNQQNLILS MENKALKQRL EGLAQEKAIK  300
HFEQEVLERE LSRLRALYQQ QQNQPQQQQQ LSSTHRRSSS RDLDSQFANL SLNNKDANSG  360
STPVTGPLRI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480294.1	0.0	PREDICTED: uncharacterized protein At4g06598
Swissprot	Q8W3M7	1e-74	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A0D2RSJ7	0.0	A0A0D2RSJ7_GOSRA; Uncharacterized protein
STRING	Gorai.005G241600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	2e-96	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G241600.2
Entrez Gene	105795283

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]