PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G241300.1
Common NameB456_005G241300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 120aa    MW: 13839.2 Da    PI: 10.3927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G241300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.9e-17798392
                        EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3  3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89
                        k+lt  dv+ +  +++p   ++eh    +g+  +s + +++d+ +++W+++l  rk++g+   vltkGW +Fvk  gLk+gD v+F l+g+++
  Gorai.005G241300.1  7 KILTATDVGVR--FSFPTATMREHfkllEGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLKVGDKVIFVLHGNHN 95
                        66777777765..7***********977555..7889***************6688888899*************************999877 PP

                        E.. CS
                  B3 90 fel 92
                         +l
  Gorai.005G241300.1 96 DHL 98
                        633 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-213104IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-16492No hitNo description
SuperFamilySSF1019361.7E-195105IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-115104IPR003340B3 DNA binding domain
PfamPF023629.3E-14798IPR003340B3 DNA binding domain
PROSITE profilePS5086310.20742104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MKELCSKILT ATDVGVRFSF PTATMREHFK LLEGSQSLDF QVMDKYSKVW TFRLYTRKND  60
GHPKPVLTKG WLDFVKRMGL KVGDKVIFVL HGNHNDHLGI LVKRNIKLLG SEHWADFFM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481135.16e-82PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A0D2NHL91e-82A0A0D2NHL9_GOSRA; Uncharacterized protein
STRINGGorai.005G241300.12e-83(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17815410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.31e-07ARF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]