PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G241200.2 | ||||||||
Common Name | B456_005G241200, LOC105796037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 94aa MW: 10942.8 Da PI: 10.5294 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5.1e-15 | 9 | 74 | 27 | 92 |
---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 27 ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +g+ +s + +++d+ +++W+++l rk++g+ vltkGW +Fvk gL++gD v+F l+g+++ +l Gorai.005G241200.2 9 EGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLRVGDKVIFVLHGNHNDHL 74 444..677899*************6688888899*************************999877633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.194 | 1 | 80 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-16 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-15 | 3 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.68E-12 | 6 | 68 | No hit | No description |
Pfam | PF02362 | 1.5E-11 | 9 | 73 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MREHFKLLEG SQSLDFQVMD KYSKVWTFRL YTRKNDGHPK PVLTKGWLDF VKRMGLRVGD 60 KVIFVLHGNH NDHLGILVKR NLKLLGSEHW GDL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481134.1 | 5e-63 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A0D2PY98 | 1e-61 | A0A0D2PY98_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G241200.1 | 2e-62 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G241200.2 |
Entrez Gene | 105796037 |
Publications ? help Back to Top | |||
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