PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G238700.4
Common NameB456_005G238700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 274aa    MW: 31280.7 Da    PI: 9.8603
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G238700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18103192198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+++ps v +  +++lpk+f++ + ++ + + t++l  e+g+++++++ +++k     l++GWk+F k++gL +gD +vF+l++ s+f 
  Gorai.005G238700.4 103 FFKIMIPSVVCRGFWMSLPKEFCQLN-LP-NHDATVILVGETGKEYRINFLVQRKA----LSGGWKKFSKEHGLLVGDALVFHLIRPSKF- 186
                         99*********************666.44.45679***************655555....9************************98999. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v ++r
  Gorai.005G238700.4 187 -KVYIVR 192
                         .777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2196194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-2497194IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-25101192No hitNo description
PfamPF023625.0E-16103192IPR003340B3 DNA binding domain
SMARTSM010193.8E-21103194IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902103194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMENIRDC RQKASRKRPR  60
DKNYNDHVVK GTKRVSEQDF AKSPVIERAE QVQANLSAEF PSFFKIMIPS VVCRGFWMSL  120
PKEFCQLNLP NHDATVILVG ETGKEYRINF LVQRKALSGG WKKFSKEHGL LVGDALVFHL  180
IRPSKFKVYI VRMNGLDEID AALGLLRLQS SANQTGICLF LGPKKTSQRM ALWMLAPVKW  240
KALGLLRLLA LQMPLELPRF PPCDLVSCRG TTL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480253.11e-159PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A0D2PYM00.0A0A0D2PYM0_GOSRA; Uncharacterized protein
STRINGGorai.005G238700.11e-142(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-33B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]