PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G238700.3 | ||||||||
Common Name | B456_005G238700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 31408.8 Da PI: 9.8603 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.2 | 1.5e-18 | 104 | 193 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk+++ps v + +++lpk+f++ + ++ + + t++l e+g+++++++ +++k l++GWk+F k++gL +gD +vF+l++ s+f Gorai.005G238700.3 104 FFKIMIPSVVCRGFWMSLPKEFCQLN-LP-NHDATVILVGETGKEYRINFLVQRKA----LSGGWKKFSKEHGLLVGDALVFHLIRPSKF- 187 99*********************666.44.45679***************655555....9************************98999. PP .EEEEE- CS B3 92 lvvkvfr 98 +v ++r Gorai.005G238700.3 188 -KVYIVR 193 .777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 97 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.77E-24 | 98 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.91E-25 | 102 | 193 | No hit | No description |
PROSITE profile | PS50863 | 13.902 | 104 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-16 | 104 | 193 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-21 | 104 | 195 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMQENIRD CRQKASRKRP 60 RDKNYNDHVV KGTKRVSEQD FAKSPVIERA EQVQANLSAE FPSFFKIMIP SVVCRGFWMS 120 LPKEFCQLNL PNHDATVILV GETGKEYRIN FLVQRKALSG GWKKFSKEHG LLVGDALVFH 180 LIRPSKFKVY IVRMNGLDEI DAALGLLRLQ SSANQTGICL FLGPKKTSQR MALWMLAPVK 240 WKALGLLRLL ALQMPLELPR FPPCDLVSCR GTTL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480251.1 | 1e-160 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
TrEMBL | A0A0D2RKN6 | 0.0 | A0A0D2RKN6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G238700.1 | 1e-159 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 5e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G238700.3 |
Publications ? help Back to Top | |||
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