PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G238700.3
Common NameB456_005G238700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 275aa    MW: 31408.8 Da    PI: 9.8603
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G238700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18104193198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+++ps v +  +++lpk+f++ + ++ + + t++l  e+g+++++++ +++k     l++GWk+F k++gL +gD +vF+l++ s+f 
  Gorai.005G238700.3 104 FFKIMIPSVVCRGFWMSLPKEFCQLN-LP-NHDATVILVGETGKEYRINFLVQRKA----LSGGWKKFSKEHGLLVGDALVFHLIRPSKF- 187
                         99*********************666.44.45679***************655555....9************************98999. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v ++r
  Gorai.005G238700.3 188 -KVYIVR 193
                         .777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2197195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-2498195IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-25102193No hitNo description
PROSITE profilePS5086313.902104195IPR003340B3 DNA binding domain
PfamPF023625.1E-16104193IPR003340B3 DNA binding domain
SMARTSM010193.8E-21104195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMQENIRD CRQKASRKRP  60
RDKNYNDHVV KGTKRVSEQD FAKSPVIERA EQVQANLSAE FPSFFKIMIP SVVCRGFWMS  120
LPKEFCQLNL PNHDATVILV GETGKEYRIN FLVQRKALSG GWKKFSKEHG LLVGDALVFH  180
LIRPSKFKVY IVRMNGLDEI DAALGLLRLQ SSANQTGICL FLGPKKTSQR MALWMLAPVK  240
WKALGLLRLL ALQMPLELPR FPPCDLVSCR GTTL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480251.11e-160PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0D2RKN60.0A0A0D2RKN6_GOSRA; Uncharacterized protein
STRINGGorai.005G238700.11e-159(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-33B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]