PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G238700.2 | ||||||||
Common Name | B456_005G238700, LOC105795255 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 391aa MW: 44523.7 Da PI: 8.5657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3e-18 | 103 | 192 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk+++ps v + +++lpk+f++ + ++ + + t++l e+g+++++++ +++k l++GWk+F k++gL +gD +vF+l++ s+f Gorai.005G238700.2 103 FFKIMIPSVVCRGFWMSLPKEFCQLN-LP-NHDATVILVGETGKEYRINFLVQRKA----LSGGWKKFSKEHGLLVGDALVFHLIRPSKF- 186 99*********************666.44.45679***************655555....9************************98999. PP .EEEEE- CS B3 92 lvvkvfr 98 +v ++r Gorai.005G238700.2 187 -KVYIVR 192 .777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-21 | 96 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-24 | 97 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.80E-26 | 101 | 192 | No hit | No description |
Pfam | PF02362 | 9.8E-16 | 103 | 192 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-21 | 103 | 194 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.902 | 103 | 194 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMENIRDC RQKASRKRPR 60 DKNYNDHVVK GTKRVSEQDF AKSPVIERAE QVQANLSAEF PSFFKIMIPS VVCRGFWMSL 120 PKEFCQLNLP NHDATVILVG ETGKEYRINF LVQRKALSGG WKKFSKEHGL LVGDALVFHL 180 IRPSKFKVYI VRMNGLDEID AALGLLRLQS SANQTGIYAA GKNNSRPFCN DINQYEVHKY 240 GRSFLRAQEN QSENGTLDVG SSKVEGIRFT KTVSIADAIR ASEISTLRSG FVPWDNALNS 300 FDFLGTDVGS LHKRVRHVLS HTFESKPELK LKYKEAKLER AYAEQETKSL ESDLSGKKEE 360 MQRLDAEIDA LTVNAKRYEL MFEAAANAPW * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480253.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2 | ||||
TrEMBL | A0A0D2RSA7 | 0.0 | A0A0D2RSA7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G238700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G238700.2 |
Entrez Gene | 105795255 |
Publications ? help Back to Top | |||
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