PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G238600.2 | ||||||||
Common Name | B456_005G238600, LOC105795254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 407aa MW: 46464.3 Da PI: 5.8698 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.5 | 1.4e-19 | 46 | 134 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k++++s+v+ +l lp +f++ h+ ++++t++ledesg++++ +i +r+ l++GWk F +++L egD++vF+l+g+s+f Gorai.005G238600.2 46 MKTMVRSNVTHGFWLHLPMPFCKLHMP--KQDTTIILEDESGEEYKASYIA----QRTALSAGWKAFSADHKLVEGDVLVFHLVGSSKF-- 128 699*******************99974..4889****************43....3456**************************9999.. PP EEEEE- CS B3 93 vvkvfr 98 +v ++r Gorai.005G238600.2 129 KVYIVR 134 777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.35E-23 | 41 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-22 | 41 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.86E-25 | 43 | 134 | No hit | No description |
PROSITE profile | PS50863 | 13.211 | 45 | 136 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-20 | 45 | 139 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-17 | 46 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MGTKIDEPQI PEMSLDPPEI TNPQPNVMER VEEIQANLAG RFPSCMKTMV RSNVTHGFWL 60 HLPMPFCKLH MPKQDTTIIL EDESGEEYKA SYIAQRTALS AGWKAFSADH KLVEGDVLVF 120 HLVGSSKFKV YIVRAFKSSE VDRCFRSLEV DIQAKPIRSI RMKRTKRPSK KAKCLELLPL 180 DPPDDNVENK SLMVLDTDSE HLTDRYDNDN KDPSSGLDDG IKSLASVIDF KEIKSIDNFI 240 IIVNGSRIDS ELSEYHRTKY YELCCSQNSF LHDNLLESIS SKLALEIITQ IINIAEAIRA 300 CKISTSQADY TLWDKTLKGF ELLGMNVGFL RAKLNRLNTL SLELQQGVNM ERCKEQDHMK 360 EEKKSLEQKL VKLKDAMHKL DTEIETLKEN AEKYELIFRE EVTAAW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480246.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
Refseq | XP_012480248.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
Refseq | XP_012480249.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
TrEMBL | A0A0D2RSA2 | 0.0 | A0A0D2RSA2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G238600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G238600.2 |
Entrez Gene | 105795254 |
Publications ? help Back to Top | |||
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