PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G238600.2
Common NameB456_005G238600, LOC105795254
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 407aa    MW: 46464.3 Da    PI: 5.8698
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G238600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-1946134298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          k++++s+v+   +l lp +f++ h+   ++++t++ledesg++++  +i     +r+ l++GWk F  +++L egD++vF+l+g+s+f  
  Gorai.005G238600.2  46 MKTMVRSNVTHGFWLHLPMPFCKLHMP--KQDTTIILEDESGEEYKASYIA----QRTALSAGWKAFSADHKLVEGDVLVFHLVGSSKF-- 128
                         699*******************99974..4889****************43....3456**************************9999.. PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                         +v ++r
  Gorai.005G238600.2 129 KVYIVR 134
                         777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-2341135IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-2241134IPR015300DNA-binding pseudobarrel domain
CDDcd100173.86E-2543134No hitNo description
PROSITE profilePS5086313.21145136IPR003340B3 DNA binding domain
SMARTSM010192.2E-2045139IPR003340B3 DNA binding domain
PfamPF023623.8E-1746134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGTKIDEPQI PEMSLDPPEI TNPQPNVMER VEEIQANLAG RFPSCMKTMV RSNVTHGFWL  60
HLPMPFCKLH MPKQDTTIIL EDESGEEYKA SYIAQRTALS AGWKAFSADH KLVEGDVLVF  120
HLVGSSKFKV YIVRAFKSSE VDRCFRSLEV DIQAKPIRSI RMKRTKRPSK KAKCLELLPL  180
DPPDDNVENK SLMVLDTDSE HLTDRYDNDN KDPSSGLDDG IKSLASVIDF KEIKSIDNFI  240
IIVNGSRIDS ELSEYHRTKY YELCCSQNSF LHDNLLESIS SKLALEIITQ IINIAEAIRA  300
CKISTSQADY TLWDKTLKGF ELLGMNVGFL RAKLNRLNTL SLELQQGVNM ERCKEQDHMK  360
EEKKSLEQKL VKLKDAMHKL DTEIETLKEN AEKYELIFRE EVTAAW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480246.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_012480248.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_012480249.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0D2RSA20.0A0A0D2RSA2_GOSRA; Uncharacterized protein
STRINGGorai.005G238600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-38B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]