PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G234300.4

Common Name

B456_005G234300, LOC105795208

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-PHD

Protein Properties

Length: 815aa MW: 89703.2 Da PI: 4.777

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G234300.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.6	1.6e-11	741	784	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++ ++L e F++n+yp+++++e+L k l++t rqV+ WF N R Gorai.005G234300.4 741 ETEKQRLCESFRENQYPDRATKERLGKDLDMTFRQVSKWFENAR 784 567899************************************99 PP
2	PHD	39.4	1.3e-13	376	430	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l +e++p g wlC+ C + Gorai.005G234300.4 376 FCAKCGSkdLSANNDIILCDGvCDRGFHQYCLQPPLLKEDIPPGdeGWLCPGCYC 430 699*977677****77****************9999*****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	8.2E-15	366	434	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.9E-13	373	429	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.941	374	431	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	9.1E-10	376	429	IPR001965	Zinc finger, PHD-type
CDD	cd15504	2.00E-26	376	428	No hit	No description
Pfam	PF00628	3.2E-11	376	430	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	377	428	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	3.2E-12	718	784	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.84E-11	729	787	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.758	730	790	IPR001356	Homeobox domain
SMART	SM00389	3.4E-7	733	794	IPR001356	Homeobox domain
CDD	cd00086	2.85E-9	737	784	No hit	No description
Pfam	PF00046	5.1E-9	741	784	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MTHEYGSGYV HETSEKKHQP GSDIVQNNLE EACTLVCGLP AEHLRPCSKD FSKNARTESL 60 RVLPEDSSKC TQIDQLSCLQ LGSVEPTAAF GSINTCKELG EPTEQQQQLG SESLSNGIGK 120 SPTATSSNAF YQALELYPEV MNQSNCGERF QSPSEGASIV SQTGKSYLVD PLGLPPGFES 180 GNSCVQQPRL HSEDMARSSG VEQHEATPKN LLENSVQGRD GESSKTRKKY TPRPLTSSDR 240 VLRSKSQEKS KASELSNNIT DIGSSEQQKG RNRNKMIEKR EVSDEYSRIR SHLRYLVNRI 300 NYERSLIAAY STEGWKGLSL EKLKPEKELQ RATSEILRRK LKIRDLFQRI DSLCAEGRLP 360 ESLFDSKGEI DSEDIFCAKC GSKDLSANND IILCDGVCDR GFHQYCLQPP LLKEDIPPGD 420 EGWLCPGCYC KLFCIELVNE SQGTSFCLAD SWEKVFPEAV VAAGGQNQDP NLELPSDDSD 480 DSDYNAENSE PDEKDQGDES SSDESDFTCS SEELEVPRNV DPCLGLLSDD SEDDNYDPDG 540 PDHDNVAEPE SSTSDFTSDS EDLGGMLKDN SSSPKDEGPV SNIGSTDSKG QKPKLGGNES 600 RSDKLSSIMD SASGQDGTAV SKKRSSEKLD YKKLYDETYV NFPSSSSDDE DWSDTIAPRK 660 RKRHAAGASS APENGNASSS RSVSISEGSK LNPEHKLRRN MRQNSKFKDT NLSPAESKGG 720 TSVSGSSGKK AGSSTHRRLG ETEKQRLCES FRENQYPDRA TKERLGKDLD MTFRQVSKWF 780 ENARWSFNHP TSNQETTAKR VAENAITSVV PKKN*

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MTHEYGSGYV HETSEKKHQP GSDIVQNNLE EACTLVCGLP AEHLRPCSKD FSKNARTESL  60
RVLPEDSSKC TQIDQLSCLQ LGSVEPTAAF GSINTCKELG EPTEQQQQLG SESLSNGIGK  120
SPTATSSNAF YQALELYPEV MNQSNCGERF QSPSEGASIV SQTGKSYLVD PLGLPPGFES  180
GNSCVQQPRL HSEDMARSSG VEQHEATPKN LLENSVQGRD GESSKTRKKY TPRPLTSSDR  240
VLRSKSQEKS KASELSNNIT DIGSSEQQKG RNRNKMIEKR EVSDEYSRIR SHLRYLVNRI  300
NYERSLIAAY STEGWKGLSL EKLKPEKELQ RATSEILRRK LKIRDLFQRI DSLCAEGRLP  360
ESLFDSKGEI DSEDIFCAKC GSKDLSANND IILCDGVCDR GFHQYCLQPP LLKEDIPPGD  420
EGWLCPGCYC KLFCIELVNE SQGTSFCLAD SWEKVFPEAV VAAGGQNQDP NLELPSDDSD  480
DSDYNAENSE PDEKDQGDES SSDESDFTCS SEELEVPRNV DPCLGLLSDD SEDDNYDPDG  540
PDHDNVAEPE SSTSDFTSDS EDLGGMLKDN SSSPKDEGPV SNIGSTDSKG QKPKLGGNES  600
RSDKLSSIMD SASGQDGTAV SKKRSSEKLD YKKLYDETYV NFPSSSSDDE DWSDTIAPRK  660
RKRHAAGASS APENGNASSS RSVSISEGSK LNPEHKLRRN MRQNSKFKDT NLSPAESKGG  720
TSVSGSSGKK AGSSTHRRLG ETEKQRLCES FRENQYPDRA TKERLGKDLD MTFRQVSKWF  780
ENARWSFNHP TSNQETTAKR VAENAITSVV PKKN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480183.1	0.0	PREDICTED: homeobox protein HAT3.1-like isoform X1
TrEMBL	A0A0D2SMB7	0.0	A0A0D2SMB7_GOSRA; Uncharacterized protein
STRING	Gorai.005G234300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	7e-92	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Gorai.005G234300.4
Entrez Gene	105795208

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]