PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G234300.3

Common Name

B456_005G234300, LOC105795208

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-PHD

Protein Properties

Length: 929aa MW: 102163 Da PI: 4.817

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G234300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.3	1.9e-11	855	898	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++ ++L e F++n+yp+++++e+L k l++t rqV+ WF N R Gorai.005G234300.3 855 ETEKQRLCESFRENQYPDRATKERLGKDLDMTFRQVSKWFENAR 898 567899************************************99 PP
2	PHD	39.2	1.6e-13	490	544	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l +e++p g wlC+ C + Gorai.005G234300.3 490 FCAKCGSkdLSANNDIILCDGvCDRGFHQYCLQPPLLKEDIPPGdeGWLCPGCYC 544 699*977677****77****************9999*****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	9.75E-15	480	548	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.3E-13	487	543	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.941	488	545	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	3.7E-11	490	544	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	9.1E-10	490	543	IPR001965	Zinc finger, PHD-type
CDD	cd15504	1.98E-26	490	542	No hit	No description
PROSITE pattern	PS01359	0	491	542	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	3.7E-12	832	898	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-10	843	901	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.758	844	904	IPR001356	Homeobox domain
SMART	SM00389	3.4E-7	847	908	IPR001356	Homeobox domain
CDD	cd00086	1.98E-9	851	898	No hit	No description
Pfam	PF00046	5.9E-9	855	898	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 929 aa Download sequence Send to blast
MINVEHMGVS PPETKSEKGN HFAPEETTSE QAHELGSEYL HTELSKNKHP CGYAITRNES 60 AETATGVSFS DIHESSSGYV DKKSPPEHLG LLPKYASEHN PPDNSFCHQE TVSGMTHEYG 120 SGYVHETSEK KHQPGSDIVQ NNLEEACTLV CGLPAEHLRP CSKDFSKNAR TESLRVLPED 180 SSKCTQIDQL SCLQLGSVEP TAAFGSINTC KELGEPTEQQ QQLGSESLSN GIGKSPTATS 240 SNAFYQALEL YPEVMNQSNC GERFQSPSEG ASIVSQTGKS YLVDPLGLPP GFESGNSCVQ 300 QPRLHSEDMA RSSGVEQHEA TPKNLLENSV QGRDGESSKT RKKYTPRPLT SSDRVLRSKS 360 QEKSKASELS NNITDIGSSE QQKGRNRNKM IEKREVSDEY SRIRSHLRYL VNRINYERSL 420 IAAYSTEGWK GLSLEKLKPE KELQRATSEI LRRKLKIRDL FQRIDSLCAE GRLPESLFDS 480 KGEIDSEDIF CAKCGSKDLS ANNDIILCDG VCDRGFHQYC LQPPLLKEDI PPGDEGWLCP 540 GCYCKLFCIE LVNESQGTSF CLADSWEKVF PEAVVAAGGQ NQDPNLELPS DDSDDSDYNA 600 ENSEPDEKDQ GDESSSDESD FTCSSEELEV PRNVDPCLGL LSDDSEDDNY DPDGPDHDNV 660 AEPESSTSDF TSDSEDLGGM LKDNSSSPKD EGPVSNIGST DSKGQKPKLG GNESRSDKLS 720 SIMDSASGQD GTAVSKKRSS EKLDYKKLYD ETYVNFPSSS SDDEDWSDTI APRKRKRHAA 780 GASSAPENGN ASSSRSVSIS EGSKLNPEHK LRRNMRQNSK FKDTNLSPAE SKGGTSVSGS 840 SGKKAGSSTH RRLGETEKQR LCESFRENQY PDRATKERLG KDLDMTFRQV SKWFENARWS 900 FNHPTSNQET TAKRVAENAI TSVVPKKN*

Sequence ? help Back to Top

Protein Sequence Length: 929 aa Download sequence Send to blast

MINVEHMGVS PPETKSEKGN HFAPEETTSE QAHELGSEYL HTELSKNKHP CGYAITRNES  60
AETATGVSFS DIHESSSGYV DKKSPPEHLG LLPKYASEHN PPDNSFCHQE TVSGMTHEYG  120
SGYVHETSEK KHQPGSDIVQ NNLEEACTLV CGLPAEHLRP CSKDFSKNAR TESLRVLPED  180
SSKCTQIDQL SCLQLGSVEP TAAFGSINTC KELGEPTEQQ QQLGSESLSN GIGKSPTATS  240
SNAFYQALEL YPEVMNQSNC GERFQSPSEG ASIVSQTGKS YLVDPLGLPP GFESGNSCVQ  300
QPRLHSEDMA RSSGVEQHEA TPKNLLENSV QGRDGESSKT RKKYTPRPLT SSDRVLRSKS  360
QEKSKASELS NNITDIGSSE QQKGRNRNKM IEKREVSDEY SRIRSHLRYL VNRINYERSL  420
IAAYSTEGWK GLSLEKLKPE KELQRATSEI LRRKLKIRDL FQRIDSLCAE GRLPESLFDS  480
KGEIDSEDIF CAKCGSKDLS ANNDIILCDG VCDRGFHQYC LQPPLLKEDI PPGDEGWLCP  540
GCYCKLFCIE LVNESQGTSF CLADSWEKVF PEAVVAAGGQ NQDPNLELPS DDSDDSDYNA  600
ENSEPDEKDQ GDESSSDESD FTCSSEELEV PRNVDPCLGL LSDDSEDDNY DPDGPDHDNV  660
AEPESSTSDF TSDSEDLGGM LKDNSSSPKD EGPVSNIGST DSKGQKPKLG GNESRSDKLS  720
SIMDSASGQD GTAVSKKRSS EKLDYKKLYD ETYVNFPSSS SDDEDWSDTI APRKRKRHAA  780
GASSAPENGN ASSSRSVSIS EGSKLNPEHK LRRNMRQNSK FKDTNLSPAE SKGGTSVSGS  840
SGKKAGSSTH RRLGETEKQR LCESFRENQY PDRATKERLG KDLDMTFRQV SKWFENARWS  900
FNHPTSNQET TAKRVAENAI TSVVPKKN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480183.1	0.0	PREDICTED: homeobox protein HAT3.1-like isoform X1
TrEMBL	A0A0D2SMB7	0.0	A0A0D2SMB7_GOSRA; Uncharacterized protein
STRING	Gorai.005G234300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-91	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Gorai.005G234300.3
Entrez Gene	105795208

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]