PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G232500.2 | ||||||||
Common Name | B456_005G232500, LOC105795188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 21475.1 Da PI: 4.7975 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 55.2 | 2.1e-17 | 2 | 94 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++ +r+ ra +Pv+Gavg++++++++++ Gorai.005G232500.2 2 SCNGCRILRKGCSENCMLRQSLqcienPQAQAHATVFVAKFFGRAGLMSFLSSVASPQRPV----------GRAINPVSGAVGLLWTGNWNVC 84 6**********************99*********************************995..........89******************** PP DUF260 89 qlkaelallk 98 q++++++l++ Gorai.005G232500.2 85 QSAVQTVLQG 94 ***9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.136 | 1 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-13 | 2 | 91 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSCNGCRILR KGCSENCMLR QSLQCIENPQ AQAHATVFVA KFFGRAGLMS FLSSVASPQR 60 PVGRAINPVS GAVGLLWTGN WNVCQSAVQT VLQGGTLQPL PEFSGGVSGS DFEDVGETVG 120 VGGGGGAGGP CIQSGGFVDV VECKASDLNL CLMIGDDDRA VQRRRESTSS EESETTTLGS 180 RFSGDGNSSN DSCGADGERK LLRLFI* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX581778 | 2e-89 | JX581778.1 Gossypium hirsutum clone NBRI_GE14483 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480163.1 | 1e-147 | PREDICTED: LOB domain-containing protein 38-like isoform X2 | ||||
Swissprot | Q9SN23 | 4e-50 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A0D2PY71 | 1e-146 | A0A0D2PY71_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G232500.1 | 1e-118 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-52 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G232500.2 |
Entrez Gene | 105795188 |
Publications ? help Back to Top | |||
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