PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G226700.4

Common Name

B456_005G226700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 333aa MW: 37337.1 Da PI: 9.731

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G226700.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	295	314	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C +C+ ++ r+++L++H+ Gorai.005G226700.4 295 FRCAICNITCGRSEDLNSHL 314 89*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03134	5.3E-10	3	40	IPR004345	TB2/DP1/HVA22-related protein
SuperFamily	SSF57667	7.44E-11	144	188	No hit	No description
SMART	SM00451	2.1E-4	155	189	IPR003604	Zinc finger, U1-type
Pfam	PF12874	5.0E-10	158	182	No hit	No description
SMART	SM00355	0.44	158	182	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.26E-7	283	324	No hit	No description
SMART	SM00451	0.004	292	326	IPR003604	Zinc finger, U1-type
Pfam	PF12874	1.9E-4	295	319	No hit	No description
SMART	SM00355	10	295	319	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	297	319	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MGILQWLPFW PYMKLTIVCW MMIPHFDGAF YVYNHFVHPC LYMDLPTIIN WFKKQQDLFL 60 KDNFLVEVAD DFVKAHGPTE VQEKLIANEP KGTETSILQK GIKPVQIAEK SEVAPILKTD 120 PNVIQTVNNT TVTLSETVGE VGPDLPKISS DKQVQKEWTC AMCQVTTTSE KTLKSHLQGR 180 KHKNKLMQAN NQPCKGKAGL ASKVKQSEVS RKEPQKKGSK NYEPPKGQMS ASSAACSNAV 240 NPKTEMSKSN LPKEEWKKVI PTTNMVGNHV KSSENVQGQQ QQVEKEHNKT KIPQFRCAIC 300 NITCGRSEDL NSHLWGRKHL AKLNSLGRGQ LA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480067.1	0.0	PREDICTED: uncharacterized protein LOC105795126 isoform X1
TrEMBL	A0A0D2SLY3	0.0	A0A0D2SLY3_GOSRA; HVA22-like protein
STRING	Gorai.005G226700.1	0.0	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.005G226700.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]