PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G217800.1

Common Name

B456_005G217800, LOC105795047

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 313aa MW: 34153.2 Da PI: 9.3901

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G217800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.7	1.7e-12	111	137	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk e+Cr + ++G+C+yG++C+FaHg+ Gorai.005G217800.1 111 YKSEICRAWEEFGHCRYGSKCQFAHGK 137 99***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.44E-9	110	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-14	110	142	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-6	110	137	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.596	110	138	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-9	111	137	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDSFYNENHK LNVLKNSNIP KLMTPARSRG SYYSSPENLI KYLRSNSLSS CGNSSSSGKS 60 SFRSSVSPQS EKTPLKVVEK DVLVMDEVLV ASDSNIVGSG SSSSSGSVGY YKSEICRAWE 120 EFGHCRYGSK CQFAHGKEEV RPACLPFKTK SEAQIYKSYA STVSNAYSSK PRLLHPVTET 180 AAFITQKDSF ANPGYTGPSF STTIKPEETI INSLSTVQPE ITRLNTNFTM KRNTKTSKIN 240 PTSTSTIRPD TSATTFTNGS NWSPQDDRID VTLPSFPGQT PSKGNIDAYI DNVLHAPATK 300 KRLPVFSAIC PE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479955.1	0.0	PREDICTED: tristetraprolin-like isoform X1
Refseq	XP_012479956.1	0.0	PREDICTED: tristetraprolin-like isoform X2
TrEMBL	A0A0D2PXG4	0.0	A0A0D2PXG4_GOSRA; Uncharacterized protein
STRING	Gorai.005G217800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15770	8	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	3e-08	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G217800.1
Entrez Gene	105795047

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]