PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G211900.1 | ||||||||
Common Name | B456_005G211900, LOC105794977 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 258aa MW: 26592.8 Da PI: 10.1465 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.4 | 1.2e-38 | 29 | 114 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s ++ns+s Gorai.005G211900.1 29 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGANSTSL 114 78**************************************************************99999777.33333333322222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-33 | 35 | 119 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.287 | 35 | 89 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSNSETAATN GSLMDPQRHQ APAANGSLAV KKPPTKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TVSVSLRGAN STSLSSTTSS 120 SLDHKPLLGP TPFILGKRVR SDDDNAGKDD SGGLTVGPGV GSIVGPNGTH PGGFWALPAR 180 PDFGQLWSFA APPPPDMVVQ AAAQQPAAAA ALFVQQQQAM GEASAARVGN YLPGHLNLLA 240 SLSGAPGGSG RRDEDPH* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479842.1 | 0.0 | PREDICTED: transcription factor TCP21 | ||||
Refseq | XP_012479843.1 | 0.0 | PREDICTED: transcription factor TCP21 | ||||
Refseq | XP_012479844.1 | 0.0 | PREDICTED: transcription factor TCP21 | ||||
Swissprot | Q9FMX2 | 3e-95 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0D2SKJ2 | 0.0 | A0A0D2SKJ2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G211900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-68 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G211900.1 |
Entrez Gene | 105794977 |
Publications ? help Back to Top | |||
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