PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G206800.1 | ||||||||
Common Name | B456_005G206800, LOC105794922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 279aa MW: 31767.3 Da PI: 5.9814 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +v+++G +W+ ++ g+ R++k+c++rw +yl Gorai.005G206800.1 14 KGTWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+e +++++ lG++ W++Ia+ ++ gRt++++k++w++ Gorai.005G206800.1 67 RGSYSKEEEETIIRLHDSLGNR-WSAIAAQLP-GRTDNEVKNHWHTT 111 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.994 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.64E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.759 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.46E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MVRTPCCDKT GLRKGTWTPE EDRKLMAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY 60 LRPNIKRGSY SKEEEETIIR LHDSLGNRWS AIAAQLPGRT DNEVKNHWHT TLKRRFKHKP 120 SAAAKDGKDN SSQDPKLRRG TSREKEETKL NDVDHLLISS PNPPLILESS LSSQQPASSD 180 QNSSITTDNT VVTSKLDSGS DDNSTTTNTN TDIHTDTLLE AYEAESSNFW TEPFFSDINY 240 MWSDVSSVVP YEADQFPLLD GEILYPFDFY DQLQGLDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479764.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A0D2RIS2 | 0.0 | A0A0D2RIS2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G206800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 4e-59 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G206800.1 |
Entrez Gene | 105794922 |
Publications ? help Back to Top | |||
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