PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G202900.1
Common NameB456_005G202900, LOC105794880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 414aa    MW: 45917.5 Da    PI: 6.7123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G202900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19203253256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Gorai.005G202900.1 203 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 253
                         59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-33202262No hitNo description
PROSITE profilePS5103222.932203260IPR001471AP2/ERF domain
SMARTSM003802.7E-40203266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-32203261IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23203261IPR016177DNA-binding domain
PfamPF008472.1E-12204253IPR001471AP2/ERF domain
PRINTSPR003678.1E-11204215IPR001471AP2/ERF domain
PRINTSPR003678.1E-11226242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTEANNRGKS QKGVVDETEK MTTFQDGETE KGKHLDSGSE RRQWKPVFDE ASISQRPLKK  60
ICSPERHHPL PSSASLAHHS SPSSSSSSSS SSSSSSSSSS LPSSRLVFPF AFDASQPPIF  120
FPRQYGNTQQ QQQQHGLIYR PLYAAETSLS PQQQQQQQQL LQHWSDALNL SPRGRMMTTT  180
TRLGQDGGQM FRPPLQPVHT TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEDAA  240
LAYDREAFKL RGENARLNFP ELFLNKDKDT SSPTPTSTVS SPQTPHESSK QEQGPKLEIN  300
PPPPAQPQGD NPDSDEMHIT AAEGSSGAGE GVSGSQELVW GDMAEAWFNT IPAGWGPASP  360
VWDDLDATNN LLFPSNLPFT NQNQQELNDS DHQKQHVSAS ASSPMKPFFW KDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21202260160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323100.0EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479716.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0D2RQ220.0A0A0D2RQ22_GOSRA; Uncharacterized protein
STRINGGorai.005G202900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.13e-46ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]