PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G202900.1 | ||||||||
Common Name | B456_005G202900, LOC105794880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 414aa MW: 45917.5 Da PI: 6.7123 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 203 | 253 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Gorai.005G202900.1 203 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 253 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.61E-33 | 202 | 262 | No hit | No description |
PROSITE profile | PS51032 | 22.932 | 203 | 260 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-40 | 203 | 266 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 203 | 261 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 203 | 261 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-12 | 204 | 253 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 204 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 226 | 242 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MTEANNRGKS QKGVVDETEK MTTFQDGETE KGKHLDSGSE RRQWKPVFDE ASISQRPLKK 60 ICSPERHHPL PSSASLAHHS SPSSSSSSSS SSSSSSSSSS LPSSRLVFPF AFDASQPPIF 120 FPRQYGNTQQ QQQQHGLIYR PLYAAETSLS PQQQQQQQQL LQHWSDALNL SPRGRMMTTT 180 TRLGQDGGQM FRPPLQPVHT TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEDAA 240 LAYDREAFKL RGENARLNFP ELFLNKDKDT SSPTPTSTVS SPQTPHESSK QEQGPKLEIN 300 PPPPAQPQGD NPDSDEMHIT AAEGSSGAGE GVSGSQELVW GDMAEAWFNT IPAGWGPASP 360 VWDDLDATNN LLFPSNLPFT NQNQQELNDS DHQKQHVSAS ASSPMKPFFW KDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-21 | 202 | 260 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU532310 | 0.0 | EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479716.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A0D2RQ22 | 0.0 | A0A0D2RQ22_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G202900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28140.1 | 3e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G202900.1 |
Entrez Gene | 105794880 |
Publications ? help Back to Top | |||
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