PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G200200.1
Common NameB456_005G200200, LOC105794856
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 223aa    MW: 23596.7 Da    PI: 10.347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G200200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-212776255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Gorai.005G200200.1 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 76
                        69*******.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.8E-402790IPR001471AP2/ERF domain
CDDcd000182.70E-182784No hitNo description
SuperFamilySSF541719.81E-232785IPR016177DNA-binding domain
PROSITE profilePS5103223.9992784IPR001471AP2/ERF domain
PfamPF008472.0E-142776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-332784IPR001471AP2/ERF domain
PRINTSPR003674.4E-112839IPR001471AP2/ERF domain
PRINTSPR003674.4E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAPQDKNASK ILKKAKVTGS TSSQEVHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAARAYDAA AREFRGPKAK TNFPLPDETN CYKGQNQQSP SQSSTVEESG SPTVERGVKT  120
LSGAVGRFPF ACHQQLALGG GVANGGISGV TRSRPVLFFE ALGGAGVVGQ VYPVRFDPVG  180
VQLGMGFASV VRSEPDSSSA IHCKARRPGL ALDLNLPPPV DA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-212785261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-212785564ATERF1
3gcc_A2e-212785564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0821080.0EU082108.1 Gossypium barbadense ethylene-responsive element binding protein (EREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479676.11e-162PREDICTED: ethylene-responsive transcription factor 9
SwissprotQ9FE676e-58ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0D2RIJ61e-161A0A0D2RIJ6_GOSRA; Uncharacterized protein
STRINGGorai.005G200200.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-43erf domain protein 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]