PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G197800.1 | ||||||||
Common Name | B456_005G197800, LOC105796214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 30133.9 Da PI: 4.6858 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 36 | 84 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Gorai.005G197800.1 36 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 84 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.60E-30 | 34 | 91 | No hit | No description |
PROSITE profile | PS51032 | 20.336 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 36 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 36 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-12 | 38 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDFNNSKINS PSSSKNKRKQ QQKQPQQQQQ QQEARFLGVR RRPWGRYAAE IRDPSTKERH 60 WLGTFDTAEE AALAYDRAAR SMRGSKVRTN FVYSDMPVGS SVTSIISPDE SQHDMSSIFP 120 IHPPFHQQTD ANQNQLFFTQ DPFNACHFSS GWNQESSDTL VSYTPITGVM DAAGNGGSQQ 180 FSDDCELPPL PPDVSSTCYG SGVDMSYTYG SWSDTGLLGS ADGFDSGVSQ PFFDFNSYEL 240 MQHTPVFGKI PSVPDTVAEG FDLGSSSSGY FF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 36 | 91 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481246.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP | ||||
Swissprot | Q9FZ90 | 2e-49 | ERF87_ARATH; Ethylene-responsive transcription factor ERF087 | ||||
TrEMBL | A0A0D2RIH9 | 0.0 | A0A0D2RIH9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G197800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 6e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G197800.1 |
Entrez Gene | 105796214 |
Publications ? help Back to Top | |||
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